{ "type": "genome", "identifier": "GCF_008728085.1", "organism": "Microbispora cellulosiformans", "title": "Microbispora cellulosiformans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenyang Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008728085.1", "bioproject": "PRJNA224116", "biosample": "SAMN12792972", "wgs_master": "VYTZ00000000.1", "refseq_category": "reference genome", "taxid": "2614688", "species_taxid": "2614688", "organism_name": "Microbispora cellulosiformans", "infraspecific_name": "strain=Gxj-6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/29", "asm_name": "ASM872808v1", "asm_submitter": "Shenyang Agricultural University", "gbrs_paired_asm": "GCA_008728085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/728/085/GCF_008728085.1_ASM872808v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8445470", "genome_size_ungapped": "8445440", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008728085.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "7471", "protein_coding_gene_count": "7312", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-29", "dateModified": "2019-09-29", "datePublished": "2019-09-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbispora cellulosiformans" ], "sample_taxid": [ "2614688" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Heilongjiang Province, Heihe City" ], "sample_host_location_id": [], "data_size": "2.261 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8445470", "Number of Sequences": "57", "Longest Sequences (bp)": "959415", "N50 (bp)": "635266", "Gap Ratio (%)": "0.000355", "GCcontent (%)": "71.6", "Number of CDSs": "7467", "Average Protein Length": "334.6", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "74", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbispora cellulosiformans", "strain": "strain=Gxj-6", "accession": "GCA_008728085.1", "taxid": 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1608, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora rosea subsp. aerata", "strain": "strain=JCM 3076", "accession": "GCA_014647835.1", "taxid": 147065, "species_taxid": 58117, "relation_to_type": "type", "validated": true, "ani": 86.9172, "matched_fragments": 1628, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora oryzae", "strain": "strain=RL4-1S", "accession": "GCA_017896165.1", "taxid": 2806554, "species_taxid": 2806554, "relation_to_type": "type", "validated": true, "ani": 83.129, "matched_fragments": 1482, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerimonospora thailandensis", "strain": "strain=NBRC 107569", "accession": "GCA_016863115.1", "taxid": 795644, "species_taxid": 795644, "relation_to_type": "type", "validated": true, "ani": 82.1691, "matched_fragments": 1131, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.7201, "matched_fragments": 1303, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 79.5969, "matched_fragments": 839, "total_fragments": 2785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 79.3007, "matched_fragments": 1264, "total_fragments": 2785, "ani_threshold": 95, 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