{ "type": "genome", "identifier": "GCF_008757455.1", "organism": "Microvirga brassicacearum", "title": "Microvirga brassicacearum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Salamanca", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008757455.1", "bioproject": "PRJNA224116", "biosample": "SAMN11658404", "wgs_master": "VCMV00000000.1", "refseq_category": "reference genome", "taxid": "2580413", "species_taxid": "2580413", "organism_name": "Microvirga brassicacearum", "infraspecific_name": "strain=CDVBN77", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/30", "asm_name": "ASM875745v1", "asm_submitter": "University of Salamanca", "gbrs_paired_asm": "GCA_008757455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/757/455/GCF_008757455.1_ASM875745v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5220401", "genome_size_ungapped": "5219891", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008757455.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4983", "protein_coding_gene_count": "4815", "non_coding_gene_count": "56", "pubmed_id": "31540065" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-30", "dateModified": "2019-09-30", "datePublished": "2019-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga brassicacearum" ], "sample_taxid": [ "2580413" ], "sample_host_organism": [ "Brassica napus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Municipality in the province of Salamanca" ], "sample_host_location_id": [], "data_size": "1.468 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5220401", "Number of Sequences": "82", "Longest Sequences (bp)": "671927", "N50 (bp)": "150733", "Gap Ratio (%)": "0.009769", "GCcontent (%)": "62.3", "Number of CDSs": "4893", "Average Protein Length": "308.3", "Coding Ratio (%)": "86.7", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga brassicacearum", "strain": "strain=CDVBN77", "accession": "GCA_008757455.1", "taxid": 2580413, "species_taxid": 2580413, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1695, "total_fragments": 1698, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microvirga antarctica", "strain": "strain=3D7", "accession": "GCA_017921815.1", "taxid": 2819233, "species_taxid": 2819233, "relation_to_type": "type", "validated": true, "ani": 81.4064, "matched_fragments": 718, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga subterranea", "strain": "strain=DSM 14364", "accession": "GCA_003350535.1", "taxid": 186651, "species_taxid": 186651, "relation_to_type": "type", "validated": true, "ani": 79.9674, "matched_fragments": 694, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 79.9148, "matched_fragments": 617, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerophila", "strain": "strain=DSM 21344", "accession": "GCA_003332305.1", "taxid": 670291, "species_taxid": 670291, "relation_to_type": "type", "validated": true, "ani": 79.8848, "matched_fragments": 586, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga zambiensis", "strain": "strain=WSM3693", "accession": "GCA_016735695.1", "taxid": 1402137, "species_taxid": 1402137, "relation_to_type": "type", "validated": true, "ani": 79.8155, "matched_fragments": 673, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga alba", "strain": "strain=BT350", "accession": "GCA_015694465.1", "taxid": 2791025, "species_taxid": 2791025, "relation_to_type": "type", "validated": true, "ani": 79.7698, "matched_fragments": 599, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga ossetica", "strain": "strain=V5/3M", "accession": "GCA_002741015.1", "taxid": 1882682, "species_taxid": 1882682, "relation_to_type": "type", "validated": true, "ani": 79.7358, "matched_fragments": 720, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerophila", "strain": "strain=NBRC 106136", "accession": "GCA_007991675.1", "taxid": 670291, "species_taxid": 670291, "relation_to_type": "type", "validated": true, "ani": 79.7278, "matched_fragments": 605, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 79.6963, "matched_fragments": 602, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga calopogonii", "strain": "strain=CCBAU 65841", "accession": "GCA_003347665.1", "taxid": 2078013, "species_taxid": 2078013, "relation_to_type": "type", "validated": true, "ani": 79.6658, "matched_fragments": 630, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 79.6291, "matched_fragments": 656, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga thermotolerans", "strain": "strain=HR1", "accession": "GCA_009363855.1", "taxid": 2651334, "species_taxid": 2651334, "relation_to_type": "type", "validated": true, "ani": 79.5868, "matched_fragments": 590, "total_fragments": 1698, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flavescens", "strain": "strain=c27j1", "accession": 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