{ "type": "genome", "identifier": "GCF_008795985.1", "organism": "Marinobacter halotolerans", "title": "Marinobacter halotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong institute of microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008795985.1", "bioproject": "PRJNA224116", "biosample": "SAMN12340958", "wgs_master": "VMHP00000000.1", "refseq_category": "reference genome", "taxid": "1569211", "species_taxid": "1569211", "organism_name": "Marinobacter halotolerans", "infraspecific_name": "strain=NBRC 110910", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/01", "asm_name": "ASM879598v1", "asm_submitter": "Guangdong institute of microbiology", "gbrs_paired_asm": "GCA_008795985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/795/985/GCF_008795985.1_ASM879598v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3784848", "genome_size_ungapped": "3784848", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008795985.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3501", "protein_coding_gene_count": "3431", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-01", "dateModified": "2019-10-01", "datePublished": "2019-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter halotolerans" ], "sample_taxid": [ "1569211" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeungdo" ], "sample_host_location_id": [], "data_size": "1.073 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3784848", "Number of Sequences": "5", "Longest Sequences (bp)": "2234069", "N50 (bp)": "2234069", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "3486", "Average Protein Length": "333.8", "Coding Ratio (%)": "92.2", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter halotolerans", "strain": "strain=NBRC 110910", "accession": "GCA_008795985.1", "taxid": 1569211, "species_taxid": 1569211, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1258, "total_fragments": 1258, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=HJM-18", "accession": "GCA_004785685.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 81.4729, "matched_fragments": 760, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=KCTC 42705", "accession": "GCA_008795935.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 81.399, "matched_fragments": 767, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vulgaris", "strain": "strain=F01", "accession": "GCA_007559285.1", "taxid": 1928331, "species_taxid": 1928331, "relation_to_type": "type", "validated": true, 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1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter orientalis", "strain": "strain=W62", "accession": "GCA_012956055.1", "taxid": 1928859, "species_taxid": 1928859, "relation_to_type": "type", "validated": true, "ani": 79.366, "matched_fragments": 549, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter adhaerens", "strain": "strain=HP15", "accession": "GCA_000166295.1", "taxid": 1033846, "species_taxid": 1033846, "relation_to_type": "type", "validated": true, "ani": 79.299, "matched_fragments": 482, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 79.2463, "matched_fragments": 473, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter orientalis", "strain": "strain=W62", "accession": "GCA_004792665.1", "taxid": 1928859, "species_taxid": 1928859, "relation_to_type": "type", "validated": true, "ani": 79.187, "matched_fragments": 545, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 79.107, "matched_fragments": 456, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 79.0757, "matched_fragments": 463, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.8188, "matched_fragments": 476, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter profundi", "strain": "strain=PWS21", "accession": "GCA_002744715.1", "taxid": 2666256, "species_taxid": 2666256, "relation_to_type": "type", "validated": true, "ani": 78.8078, "matched_fragments": 429, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter oulmenensis", "strain": "strain=DSM 22359", "accession": "GCA_014201735.1", "taxid": 643747, "species_taxid": 643747, "relation_to_type": "type", "validated": true, "ani": 78.7403, "matched_fragments": 383, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maritimus", "strain": "strain=CK47", "accession": "GCA_007671675.1", "taxid": 277961, "species_taxid": 277961, "relation_to_type": "type", "validated": true, "ani": 78.2797, "matched_fragments": 330, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 76.5787, "matched_fragments": 101, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 76.4962, "matched_fragments": 96, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008795985.1", "gtdb_species": 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