{ "type": "genome", "identifier": "GCF_008801395.1", "organism": "Pseudomonas tolaasii", "title": "Pseudomonas tolaasii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008801395.1", "bioproject": "PRJNA224116", "biosample": "SAMN12697594", "wgs_master": "VZPT00000000.1", "refseq_category": "na", "taxid": "29442", "species_taxid": "29442", "organism_name": "Pseudomonas tolaasii", "infraspecific_name": "strain=CCUG 23369", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/01", "asm_name": "ASM880139v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_008801395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/801/395/GCF_008801395.1_ASM880139v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6744628", "genome_size_ungapped": "6744628", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008801395.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "6140", "protein_coding_gene_count": "5996", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-01", "dateModified": "2019-10-01", "datePublished": "2019-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas tolaasii" ], "sample_taxid": [ "29442" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: England" ], "sample_host_location_id": [], "data_size": "1.886 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6744628", "Number of Sequences": "55", "Longest Sequences (bp)": "980033", "N50 (bp)": "365134", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "6053", "Average Protein Length": "326.8", "Coding Ratio (%)": "88.0", "Number of rRNAs": "8", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas tolaasii", "strain": "strain=CCUG 23369", "accession": "GCA_008801395.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2221, "total_fragments": 2222, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas tolaasii", "strain": "strain=NCPPB 2192", "accession": "GCA_002813445.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", "validated": true, "ani": 99.9988, "matched_fragments": 2222, "total_fragments": 2222, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas tolaasii", "strain": "", "accession": "GCA_900625075.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", "validated": true, "ani": 99.9961, "matched_fragments": 2218, "total_fragments": 2222, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.3299, "matched_fragments": 1625, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "", "accession": "GCA_900624915.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.3055, "matched_fragments": 1636, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 88.2586, "matched_fragments": 1663, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NBRC 14160", "accession": "GCA_002091595.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 88.2504, "matched_fragments": 1629, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "", "accession": "GCA_900625005.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 88.2188, "matched_fragments": 1606, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=DSM 50090", "accession": "GCA_007858165.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0852, "matched_fragments": 1673, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas canadensis", "strain": "strain=2-92", "accession": "GCA_000503215.1", "taxid": 915099, "species_taxid": 915099, "relation_to_type": "type", "validated": true, "ani": 88.0824, "matched_fragments": 1648, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0535, "matched_fragments": 1538, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_900111895.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 87.9879, "matched_fragments": 1584, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 87.9628, "matched_fragments": 1612, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 87.951, "matched_fragments": 1591, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nabeulensis", "strain": "strain=E10B", "accession": "GCA_004682045.1", "taxid": 2293833, "species_taxid": 2293833, "relation_to_type": "type", "validated": true, "ani": 87.9137, "matched_fragments": 1525, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kairouanensis", "strain": "strain=KC12", "accession": "GCA_004682055.1", "taxid": 2293832, "species_taxid": 2293832, "relation_to_type": "type", "validated": true, "ani": 87.8202, "matched_fragments": 1511, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas asgharzadehiana", "strain": "strain=SWRI132", "accession": "GCA_019139815.1", "taxid": 2842349, "species_taxid": 2842349, "relation_to_type": "type", "validated": true, "ani": 87.5503, "matched_fragments": 1470, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 85.9515, "matched_fragments": 1493, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas karstica", "strain": "strain=CCM 7891", "accession": "GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, "relation_to_type": "type", "validated": true, "ani": 84.9616, "matched_fragments": 1333, "total_fragments": 2222, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002813445.1", "gtdb_species": "s__Pseudomonas_E tolaasii", "ani": 99.9988, "matched_fragments": 2222, "total_fragments": 2222, "gtdb_taxonomy": 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