{ "type": "genome", "identifier": "GCF_008801455.1", "organism": "Pseudomonas reinekei", "title": "Pseudomonas reinekei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008801455.1", "bioproject": "PRJNA224116", "biosample": "SAMN12697593", "wgs_master": "VZPS00000000.1", "refseq_category": "na", "taxid": "395598", "species_taxid": "395598", "organism_name": "Pseudomonas reinekei", "infraspecific_name": "strain=CCUG 53116", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/01", "asm_name": "ASM880145v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_008801455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/801/455/GCF_008801455.1_ASM880145v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6256747", "genome_size_ungapped": "6256747", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008801455.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "5788", "protein_coding_gene_count": "5580", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-01", "dateModified": "2019-10-01", "datePublished": "2019-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas reinekei" ], "sample_taxid": [ "395598" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: River Elbe, near Bitterfield" ], "sample_host_location_id": [], "data_size": "1.763 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6256747", "Number of Sequences": "72", "Longest Sequences (bp)": "592223", "N50 (bp)": "237946", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.2", "Number of CDSs": "5708", "Average Protein Length": "319.8", "Coding Ratio (%)": "87.5", "Number of rRNAs": "7", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas reinekei", "strain": "strain=CCUG 53116", "accession": "GCA_008801455.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2051, "total_fragments": 2055, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=MT1", "accession": "GCA_001945365.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 99.9947, "matched_fragments": 2045, "total_fragments": 2055, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas azerbaijanoccidens", "strain": "strain=SWRI74", "accession": "GCA_019145495.1", "taxid": 2842347, "species_taxid": 2842347, "relation_to_type": "type", "validated": true, "ani": 90.9159, "matched_fragments": 1664, "total_fragments": 2055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas moorei", "strain": "strain=CCUG 53114", "accession": "GCA_008801475.1", "taxid": 395599, "species_taxid": 395599, "relation_to_type": "type", "validated": true, "ani": 87.8976, "matched_fragments": 1529, "total_fragments": 2055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 87.8191, "matched_fragments": 1504, "total_fragments": 2055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jessenii", "strain": "strain=DSM 17150", "accession": "GCA_002236115.1", "taxid": 77298, "species_taxid": 77298, "relation_to_type": "suspected-type", "validated": true, "ani": 87.788, "matched_fragments": 1502, "total_fragments": 2055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mohnii", "strain": "strain=DSM 18327", "accession": "GCA_900105115.1", "taxid": 395600, "species_taxid": 395600, "relation_to_type": "type", "validated": true, "ani": 87.5008, "matched_fragments": 1511, "total_fragments": 2055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"accession": "GCA_008801525.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 86.6259, "matched_fragments": 1395, "total_fragments": 2055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas farris", "strain": "strain=SWRI79", "accession": "GCA_019145235.1", "taxid": 2841207, "species_taxid": 2841207, "relation_to_type": "type", "validated": true, "ani": 86.5601, "matched_fragments": 1398, "total_fragments": 2055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 86.2056, "matched_fragments": 1405, "total_fragments": 2055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, 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