{ "type": "genome", "identifier": "GCF_008801485.1", "organism": "Pseudomonas psychrophila", "title": "Pseudomonas psychrophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008801485.1", "bioproject": "PRJNA224116", "biosample": "SAMN12697592", "wgs_master": "VZPR00000000.1", "refseq_category": "na", "taxid": "122355", "species_taxid": "122355", "organism_name": "Pseudomonas psychrophila", "infraspecific_name": "strain=CCUG 53877", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/01", "asm_name": "ASM880148v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_008801485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/801/485/GCF_008801485.1_ASM880148v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5269270", "genome_size_ungapped": "5269270", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008801485.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "4828", "protein_coding_gene_count": "4666", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-01", "dateModified": "2019-10-01", "datePublished": "2019-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas psychrophila" ], "sample_taxid": [ "122355" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.492 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5269270", "Number of Sequences": "36", "Longest Sequences (bp)": "865787", "N50 (bp)": "361652", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "4772", "Average Protein Length": "323.9", "Coding Ratio (%)": "88.0", "Number of rRNAs": "4", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas psychrophila", "strain": "strain=CCUG 53877", "accession": "GCA_008801485.1", "taxid": 122355, "species_taxid": 122355, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1739, "total_fragments": 1742, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas psychrophila", "strain": "strain=DSM 17535", "accession": "GCA_001043005.1", "taxid": 122355, "species_taxid": 122355, "relation_to_type": "type", "validated": true, "ani": 99.9955, "matched_fragments": 1737, "total_fragments": 1742, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas deceptionensis", "strain": "strain=DSM 26521", "accession": "GCA_001042895.1", "taxid": 882211, "species_taxid": 882211, "relation_to_type": "type", "validated": true, "ani": 89.0982, "matched_fragments": 1399, "total_fragments": 1742, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas deceptionensis", "strain": "strain=LMG 25555", "accession": "GCA_900106095.1", "taxid": 882211, "species_taxid": 882211, "relation_to_type": "type", "validated": true, "ani": 89.059, "matched_fragments": 1405, "total_fragments": 1742, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fragi", "strain": "strain=NBRC 3458", "accession": "GCA_002091615.1", "taxid": 296, "species_taxid": 296, "relation_to_type": "type", "validated": true, "ani": 87.5617, "matched_fragments": 1317, "total_fragments": 1742, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fragi", "strain": "strain=NRRL B-727", "accession": "GCA_900105835.1", "taxid": 296, "species_taxid": 296, "relation_to_type": "type", "validated": true, "ani": 87.5549, "matched_fragments": 1325, "total_fragments": 1742, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas helleri", "strain": "strain=DSM 29165", "accession": "GCA_001043025.1", "taxid": 1608996, "species_taxid": 1608996, "relation_to_type": "type", "validated": true, "ani": 84.3799, "matched_fragments": 1142, "total_fragments": 1742, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.248, "cell_length": 0.186, "doubling_h": -0.025, "growth_tmp": 27.0, "optimum_tmp": 25.0, "optimum_ph": 7.258, "genome_size": 5365727.625, "gc_content": 57.51, "coding_genes": 4425.0, "rRNA16S_genes": 5.319, "tRNA_genes": 67.35, "gram_stain": 0.0, "sporulation": 0.013, "motility": 1.0, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudomonas", "psychrophila" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }