{ "type": "genome", "identifier": "GCF_008801495.1", "organism": "Pseudomonas palleroniana", "title": "Pseudomonas palleroniana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008801495.1", "bioproject": "PRJNA224116", "biosample": "SAMN12697591", "wgs_master": "VZPQ00000000.1", "refseq_category": "na", "taxid": "191390", "species_taxid": "191390", "organism_name": "Pseudomonas palleroniana", "infraspecific_name": "strain=CCUG 51524", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/01", "asm_name": "ASM880149v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_008801495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/801/495/GCF_008801495.1_ASM880149v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6553028", "genome_size_ungapped": "6553028", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "878", "contig_count": "878", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008801495.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "6503", "protein_coding_gene_count": "6046", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-01", "dateModified": "2019-10-01", "datePublished": "2019-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas palleroniana" ], "sample_taxid": [ "191390" ], "sample_host_organism": [ "Oryza sativa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Cameroon" ], "sample_host_location_id": [], "data_size": "1.848 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.85, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6553028", "Number of Sequences": "878", "Longest Sequences (bp)": "964715", "N50 (bp)": "255601", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "5520", "Average Protein Length": "328.6", "Coding Ratio (%)": "83.0", "Number of rRNAs": "4", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas palleroniana", "strain": "strain=CCUG 51524", "accession": "GCA_008801495.1", "taxid": 191390, "species_taxid": 191390, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2012, "total_fragments": 2012, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas palleroniana", "strain": "strain=LMG 23076", "accession": "GCA_003031675.1", "taxid": 191390, "species_taxid": 191390, "relation_to_type": "type", "validated": true, "ani": 99.9775, "matched_fragments": 1986, "total_fragments": 2012, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 87.9628, "matched_fragments": 1589, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "", "accession": "GCA_900624915.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 87.9428, "matched_fragments": 1614, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 87.8708, "matched_fragments": 1554, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "strain=LMG 19695", "accession": "GCA_001870465.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 87.8181, "matched_fragments": 1589, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 87.8147, "matched_fragments": 1580, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "strain=CCUG 51517", "accession": "GCA_008801565.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 87.8063, "matched_fragments": 1588, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "", "accession": "GCA_900625005.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 87.7995, "matched_fragments": 1597, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NBRC 14160", "accession": "GCA_002091595.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 87.7793, "matched_fragments": 1574, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=DSM 50090", "accession": "GCA_007858165.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 87.7051, "matched_fragments": 1624, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=NCTC10038", "accession": "GCA_900475215.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 87.664, "matched_fragments": 1624, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 87.5724, "matched_fragments": 1580, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas antarctica", "strain": "", "accession": "GCA_900624995.1", "taxid": 219572, 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"type", "validated": true, "ani": 87.2182, "matched_fragments": 1517, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lactis", "strain": "strain=DSM 29167", "accession": "GCA_001439845.1", "taxid": 1615674, "species_taxid": 1615674, "relation_to_type": "type", "validated": true, "ani": 87.1946, "matched_fragments": 1555, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas spelaei", "strain": "strain=CCM 7893", "accession": "GCA_009724245.1", "taxid": 1055469, "species_taxid": 1055469, "relation_to_type": "type", "validated": true, "ani": 85.5703, "matched_fragments": 1455, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas karstica", "strain": "strain=CCM 7891", "accession": "GCA_009707515.1", "taxid": 1055468, "species_taxid": 1055468, "relation_to_type": "type", "validated": true, "ani": 84.8134, "matched_fragments": 1279, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kilonensis", "strain": "strain=DSM 13647", "accession": "GCA_001269885.1", "taxid": 132476, "species_taxid": 132476, "relation_to_type": "type", "validated": true, "ani": 83.3732, "matched_fragments": 1168, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicacearum", "strain": "strain=JCM 11938", "accession": "GCA_012034345.1", "taxid": 930166, "species_taxid": 930166, "relation_to_type": "suspected-type", "validated": true, "ani": 83.104, "matched_fragments": 1216, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thivervalensis", "strain": "strain=DSM 13194", "accession": "GCA_001269655.1", "taxid": 86265, "species_taxid": 86265, "relation_to_type": "type", "validated": true, "ani": 83.1003, "matched_fragments": 1202, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicacearum subsp. brassicacearum", "strain": "strain=CCUG 51508", "accession": "GCA_008801605.1", "taxid": 86264, "species_taxid": 930166, "relation_to_type": "type", "validated": true, "ani": 83.0734, "matched_fragments": 1212, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zanjanensis", "strain": "strain=SWRI12", "accession": "GCA_014268745.2", "taxid": 2745496, "species_taxid": 2745496, "relation_to_type": "type", "validated": true, "ani": 83.0526, "matched_fragments": 1153, "total_fragments": 2012, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.85, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003031675.1", "gtdb_species": "s__Pseudomonas_E palleroniana", "ani": 99.9775, "matched_fragments": 1986, "total_fragments": 2012, 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