{ "tc_result": [ { "organism_name": "Pseudochrobactrum saccharolyticum", "strain": "strain=CCUG 33852", "accession": "GCA_008801715.1", "taxid": 354352, "species_taxid": 354352, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1248, "total_fragments": 1248, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudochrobactrum saccharolyticum", "strain": "strain=DSM 25620", "accession": "GCA_014203195.1", "taxid": 354352, "species_taxid": 354352, "relation_to_type": "type", "validated": true, "ani": 99.9972, "matched_fragments": 1237, "total_fragments": 1248, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudochrobactrum algeriensis", "strain": "", "accession": "GCA_907164595.1", "taxid": 2834768, "species_taxid": 2834768, "relation_to_type": "type", "validated": true, "ani": 96.2559, "matched_fragments": 1173, "total_fragments": 1248, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudochrobactrum algeriensis", "strain": "", "accession": "GCA_018436245.1", "taxid": 2834768, "species_taxid": 2834768, "relation_to_type": "type", "validated": true, "ani": 96.2558, "matched_fragments": 1173, "total_fragments": 1248, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudochrobactrum asaccharolyticum", "strain": "strain=DSM 25619", "accession": "GCA_003314995.1", "taxid": 354351, "species_taxid": 354351, "relation_to_type": "type", "validated": true, "ani": 87.0151, "matched_fragments": 1006, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 76.4515, "matched_fragments": 152, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 2682096, "species_taxid": 2682096, "relation_to_type": "type", "validated": true, "ani": 75.916, "matched_fragments": 81, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 75.8212, "matched_fragments": 78, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008801715.1", "gtdb_species": "s__Pseudochrobactrum saccharolyticum", "ani": 100.0, "matched_fragments": 1248, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Pseudochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.83", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_900470285.1", "gtdb_species": "s__Pseudochrobactrum sp900470285", "ani": 93.3173, "matched_fragments": 1106, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Pseudochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003314995.1", "gtdb_species": "s__Pseudochrobactrum asaccharolyticum", "ani": 87.0251, "matched_fragments": 1005, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Pseudochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.18", "min_intra_species_ani": "95.14", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014205685.1", "gtdb_species": "s__Paenochrobactrum gallinarii", "ani": 78.9533, "matched_fragments": 340, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Paenochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006476605.1", "gtdb_species": "s__Ochrobactrum_A gallinifaecis", "ani": 77.9865, "matched_fragments": 251, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002252525.1", "gtdb_species": "s__Ochrobactrum_A pseudogrignonensis", "ani": 77.6408, "matched_fragments": 298, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.81", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCA_900465685.1", "gtdb_species": "s__Ochrobactrum_B sp900465685", "ani": 77.4231, "matched_fragments": 324, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008932435.1", "gtdb_species": "s__Ochrobactrum pseudintermedium", "ani": 77.3871, "matched_fragments": 254, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "97.85", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_014199265.1", "gtdb_species": "s__Ochrobactrum_C daejeonensis", "ani": 77.3003, "matched_fragments": 253, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.74", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900104355.1", "gtdb_species": "s__Phyllobacterium sp900104355", "ani": 77.1883, "matched_fragments": 217, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003149535.1", "gtdb_species": "s__Falsochrobactrum shanghaiense", "ani": 77.1877, "matched_fragments": 259, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Falsochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014640615.1", "gtdb_species": "s__Paramesorhizobium endophyticum", "ani": 76.769, "matched_fragments": 178, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Paramesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002980495.1", "gtdb_species": "s__Paramesorhizobium phragmitis", "ani": 76.5257, "matched_fragments": 215, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Paramesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001704765.1", "gtdb_species": "s__Sinorhizobium shofinae", "ani": 75.7823, "matched_fragments": 78, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Sinorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }