{
    "type": "genome",
    "identifier": "GCF_008801775.1",
    "organism": "Fusobacterium necrophorum subsp. funduliforme",
    "title": "Fusobacterium necrophorum subsp. funduliforme",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gothenburg - CCUG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008801775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12697574",
        "wgs_master": "VZOZ00000000.1",
        "refseq_category": "na",
        "taxid": "143387",
        "species_taxid": "859",
        "organism_name": "Fusobacterium necrophorum subsp. funduliforme",
        "infraspecific_name": "strain=CCUG 42162",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/01",
        "asm_name": "ASM880177v1",
        "asm_submitter": "University of Gothenburg - CCUG",
        "gbrs_paired_asm": "GCA_008801775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/801/775/GCF_008801775.1_ASM880177v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2124940",
        "genome_size_ungapped": "2124940",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "26",
        "contig_count": "26",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008801775.1-RS_2024_05_29",
        "annotation_date": "2024-05-29",
        "total_gene_count": "2095",
        "protein_coding_gene_count": "2005",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-01",
    "dateModified": "2019-10-01",
    "datePublished": "2019-10-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium necrophorum subsp. funduliforme"
        ],
        "sample_taxid": [
            "143387"
        ],
        "sample_host_organism": [
            "bovine"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.589 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2124940",
        "Number of Sequences": "26",
        "Longest Sequences (bp)": "584258",
        "N50 (bp)": "218007",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.9",
        "Number of CDSs": "2027",
        "Average Protein Length": "319.9",
        "Coding Ratio (%)": "91.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fusobacterium necrophorum subsp. funduliforme",
                "strain": "strain=CCUG 42162",
                "accession": "GCA_008801775.1",
                "taxid": 143387,
                "species_taxid": 859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 696,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium necrophorum subsp. funduliforme",
                "strain": "strain=ATCC 51357",
                "accession": "GCA_000262225.1",
                "taxid": 143387,
                "species_taxid": 859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9871,
                "matched_fragments": 667,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium necrophorum",
                "strain": "strain=ATCC 25286",
                "accession": "GCA_900104395.1",
                "taxid": 859,
                "species_taxid": 859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1234,
                "matched_fragments": 590,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium necrophorum subsp. necrophorum",
                "strain": "strain=ATCC 25286",
                "accession": "GCA_004006635.1",
                "taxid": 143388,
                "species_taxid": 859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.0524,
                "matched_fragments": 606,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium gonidiaformans",
                "strain": "strain=ATCC 25563",
                "accession": "GCA_003019695.1",
                "taxid": 849,
                "species_taxid": 849,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.363,
                "matched_fragments": 419,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004006635.1",
                "gtdb_species": "s__Fusobacterium_C necrophorum",
                "ani": 97.0801,
                "matched_fragments": 605,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 49,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003019695.1",
                "gtdb_species": "s__Fusobacterium_C gonidiaformans",
                "ani": 82.3704,
                "matched_fragments": 419,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001457555.1",
                "gtdb_species": "s__Fusobacterium polymorphum",
                "ani": 77.1129,
                "matched_fragments": 80,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCF_900095705.1",
                "gtdb_species": "s__Fusobacterium massiliense",
                "ani": 77.0242,
                "matched_fragments": 79,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000493815.1",
                "gtdb_species": "s__Fusobacterium nucleatum_E",
                "ani": 76.6253,
                "matched_fragments": 90,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000158275.2",
                "gtdb_species": "s__Fusobacterium animalis",
                "ani": 76.5897,
                "matched_fragments": 85,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.57",
                "min_intra_species_ani": "95.72",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_016724785.1",
                "gtdb_species": "s__Fusobacterium canifelinum",
                "ani": 76.3401,
                "matched_fragments": 83,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000381725.1",
                "gtdb_species": "s__Fusobacterium russii",
                "ani": 76.2825,
                "matched_fragments": 81,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008633215.1",
                "gtdb_species": "s__Fusobacterium nucleatum_J",
                "ani": 76.2388,
                "matched_fragments": 100,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.47",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012843705.1",
                "gtdb_species": "s__Fusobacterium_B sp012843705",
                "ani": 76.0027,
                "matched_fragments": 52,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000622245.1",
                "gtdb_species": "s__Fusobacterium_B perfoetens",
                "ani": 75.9642,
                "matched_fragments": 64,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.115,
        "doubling_h": -0.328,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.375,
        "optimum_ph": 7.0,
        "genome_size": 2274801.575,
        "gc_content": 34.276,
        "coding_genes": 2081.0,
        "rRNA16S_genes": 5.708,
        "tRNA_genes": 50.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Fusobacterium",
        "necrophorum",
        "subsp.",
        "funduliforme"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}