{ "type": "genome", "identifier": "GCF_008801975.1", "organism": "Castellaniella defragrans", "title": "Castellaniella defragrans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008801975.1", "bioproject": "PRJNA224116", "biosample": "SAMN12697567", "wgs_master": "VZOS00000000.1", "refseq_category": "na", "taxid": "75697", "species_taxid": "75697", "organism_name": "Castellaniella defragrans", "infraspecific_name": "strain=CCUG 39790", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/01", "asm_name": "ASM880197v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_008801975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/801/975/GCF_008801975.1_ASM880197v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3962237", "genome_size_ungapped": "3962237", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "345", "contig_count": "345", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008801975.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "3822", "protein_coding_gene_count": "3632", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-01", "dateModified": "2019-10-01", "datePublished": "2019-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Castellaniella defragrans" ], "sample_taxid": [ "75697" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Parapusillimonas granuli", "strain": "strain=LMG 24012", "accession": "GCA_013416525.1", "taxid": 380911, "species_taxid": 380911, "relation_to_type": "type", "validated": true, "ani": 80.1626, "matched_fragments": 501, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parapusillimonas granuli", "strain": "strain=DSM 18079", "accession": "GCA_014202705.1", "taxid": 380911, "species_taxid": 380911, "relation_to_type": "type", "validated": true, "ani": 80.1142, "matched_fragments": 514, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter pulmonis", "strain": "strain=LMG 26696", "accession": "GCA_902859765.1", "taxid": 1389932, "species_taxid": 1389932, "relation_to_type": "type", "validated": true, "ani": 79.8056, "matched_fragments": 538, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7845, "matched_fragments": 465, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=FDAARGOS_1543", "accession": "GCA_020736265.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 79.7481, "matched_fragments": 478, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 79.7349, "matched_fragments": 609, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=18323", "accession": "GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 79.7154, "matched_fragments": 480, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 79.7098, "matched_fragments": 611, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pseudohinzii", "strain": "strain=8-296-03", "accession": "GCA_000657795.2", "taxid": 1331258, "species_taxid": 1331258, "relation_to_type": "type", "validated": true, "ani": 79.6786, "matched_fragments": 485, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=NBRC 13691", "accession": "GCA_001598655.1", 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