{ "type": "genome", "identifier": "GCF_008802135.1", "organism": "Burkholderia latens", "title": "Burkholderia latens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008802135.1", "bioproject": "PRJNA224116", "biosample": "SAMN12697558", "wgs_master": "VZOJ00000000.1", "refseq_category": "na", "taxid": "488446", "species_taxid": "488446", "organism_name": "Burkholderia latens", "infraspecific_name": "strain=CCUG 54555", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/01", "asm_name": "ASM880213v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_008802135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/802/135/GCF_008802135.1_ASM880213v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7103502", "genome_size_ungapped": "7103502", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "291", "contig_count": "291", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008802135.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "6653", "protein_coding_gene_count": "6345", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-01", "dateModified": "2019-10-01", "datePublished": "2019-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia latens" ], "sample_taxid": [ "488446" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "1.926 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7103502", "Number of Sequences": "291", "Longest Sequences (bp)": "283829", "N50 (bp)": "51591", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.8", "Number of CDSs": "6155", "Average Protein Length": "314.1", "Coding Ratio (%)": "81.7", "Number of rRNAs": "6", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia latens", "strain": "strain=CCUG 54555", "accession": "GCA_008802135.1", "taxid": 488446, "species_taxid": 488446, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2219, "total_fragments": 2230, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia latens", "strain": "", "accession": "GCA_902499045.1", "taxid": 488446, "species_taxid": 488446, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9925, "matched_fragments": 2196, "total_fragments": 2230, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia ambifaria", "strain": "strain=AMMD", "accession": "GCA_000203915.1", "taxid": 152480, "species_taxid": 152480, "relation_to_type": "type", "validated": true, "ani": 91.881, "matched_fragments": 1781, "total_fragments": 2230, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ambifaria", "strain": "strain=AMMD", "accession": "GCA_000959545.1", "taxid": 152480, "species_taxid": 152480, "relation_to_type": "type", "validated": true, "ani": 91.878, "matched_fragments": 1785, "total_fragments": 2230, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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83.3743, "matched_fragments": 1288, "total_fragments": 2230, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 81.6637, "matched_fragments": 1068, "total_fragments": 2230, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902499045.1", "gtdb_species": "s__Burkholderia latens", "ani": 99.9925, "matched_fragments": 2196, "total_fragments": 2230, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", 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