{ "type": "genome", "identifier": "GCF_008805035.1", "organism": "Eikenella exigua", "title": "Eikenella exigua", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Haukeland University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008805035.1", "bioproject": "PRJNA224116", "biosample": "SAMN10995776", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2528037", "species_taxid": "2528037", "organism_name": "Eikenella exigua", "infraspecific_name": "strain=PXX", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/19", "asm_name": "ASM880503v1", "asm_submitter": "Haukeland University Hospital", "gbrs_paired_asm": "GCA_008805035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/805/035/GCF_008805035.1_ASM880503v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1993063", "genome_size_ungapped": "1993063", "gc_percent": "55.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008805035.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2076", "protein_coding_gene_count": "1944", "non_coding_gene_count": "66", "pubmed_id": "31693476" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-19", "dateModified": "2019-08-19", "datePublished": "2019-08-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Eikenella exigua" ], "sample_taxid": [ "2528037" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Brain abscess" ], "sample_host_disease_id": [], 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"total_fragments": 664, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Eikenella corrodens", "strain": "strain=NCTC10596", "accession": "GCA_900187105.1", "taxid": 539, "species_taxid": 539, "relation_to_type": "type", "validated": true, "ani": 92.2507, "matched_fragments": 547, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eikenella corrodens", "strain": "strain=FDAARGOS_1474", "accession": "GCA_019930845.1", "taxid": 539, "species_taxid": 539, "relation_to_type": "type", "validated": true, "ani": 92.2463, "matched_fragments": 546, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eikenella corrodens", "strain": "strain=ATCC 23834", "accession": "GCA_000158615.1", "taxid": 539, "species_taxid": 539, "relation_to_type": "type", "validated": true, "ani": 92.1693, "matched_fragments": 541, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { 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85.8014, "matched_fragments": 505, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016025525.2", "gtdb_species": "s__Eikenella sp016025525", "ani": 85.5409, "matched_fragments": 513, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000190695.1", "gtdb_species": "s__Kingella_A denitrificans", "ani": 80.8849, "matched_fragments": 206, 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Eikenella", "exigua" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }