{ "type": "genome", "identifier": "GCF_008806595.1", "organism": "Streptomyces luteolifulvus", "title": "Streptomyces luteolifulvus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Harbin Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008806595.1", "bioproject": "PRJNA224116", "biosample": "SAMN12794447", "wgs_master": "VZRB00000000.1", "refseq_category": "reference genome", "taxid": "2615112", "species_taxid": "2615112", "organism_name": "Streptomyces luteolifulvus", "infraspecific_name": "strain=HIT-DPA4", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/02", "asm_name": "ASM880659v1", "asm_submitter": "Harbin Institute of Technology", "gbrs_paired_asm": "GCA_008806595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/806/595/GCF_008806595.1_ASM880659v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9033607", "genome_size_ungapped": "9033497", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "105", "contig_count": "105", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008806595.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "8305", "protein_coding_gene_count": "7893", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-02", "dateModified": "2019-10-02", "datePublished": "2019-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces luteolifulvus" ], "sample_taxid": [ "2615112" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jiangsu province" ], "sample_host_location_id": [], "data_size": "2.450 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9033607", "Number of Sequences": "105", "Longest Sequences (bp)": "521892", "N50 (bp)": "198006", "Gap Ratio (%)": "0.001218", "GCcontent (%)": "70.5", "Number of CDSs": "8323", "Average Protein Length": "316.1", "Coding Ratio (%)": "87.4", "Number of rRNAs": "7", "Number of tRNAs": "78", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces curacoi", "strain": "strain=DSM 40107", "accession": "GCA_001513975.1", "taxid": 146536, "species_taxid": 146536, "relation_to_type": "type", "validated": true, "ani": 86.5169, "matched_fragments": 1741, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cyaneochromogenes", "strain": "strain=MK-45", "accession": "GCA_003963535.1", "taxid": 2496836, "species_taxid": 2496836, "relation_to_type": "type", "validated": true, "ani": 85.9754, "matched_fragments": 1940, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 85.7974, "matched_fragments": 1676, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=DSM 41428", "accession": "GCA_021440105.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 85.795, "matched_fragments": 1737, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 85.7804, "matched_fragments": 1847, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=JCM 4866", "accession": "GCA_014651035.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 85.7761, "matched_fragments": 1735, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gossypiisoli", "strain": "strain=TRM 44567", "accession": "GCA_013433285.1", "taxid": 2748864, "species_taxid": 2748864, "relation_to_type": "type", "validated": true, "ani": 85.7334, "matched_fragments": 1764, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces plumbidurans", "strain": "strain=KC 17012", "accession": "GCA_019857225.1", "taxid": 2814589, "species_taxid": 2814589, "relation_to_type": "type", "validated": true, "ani": 85.6903, "matched_fragments": 1699, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caeruleatus", "strain": "strain=NRRL B-24802", "accession": "GCA_001514235.1", "taxid": 661399, "species_taxid": 661399, "relation_to_type": "type", "validated": true, "ani": 85.6522, "matched_fragments": 1825, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinoverrucosus", "strain": "strain=JCM 5077", "accession": "GCA_014651195.1", "taxid": 284043, "species_taxid": 284043, "relation_to_type": "type", "validated": true, "ani": 85.6258, "matched_fragments": 1757, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinoverrucosus", "strain": "strain=NBRC 14228", "accession": "GCA_006539505.1", "taxid": 284043, "species_taxid": 284043, "relation_to_type": "type", "validated": true, "ani": 85.5974, "matched_fragments": 1721, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 85.584, "matched_fragments": 1762, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseicoloratus", "strain": "strain=TRM S81-3", "accession": "GCA_014534645.1", "taxid": 2752516, "species_taxid": 2752516, "relation_to_type": "type", "validated": true, "ani": 85.5281, "matched_fragments": 1681, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cellostaticus", "strain": "strain=DSM 40189", "accession": "GCA_001513965.1", "taxid": 67285, "species_taxid": 67285, "relation_to_type": "type", "validated": true, "ani": 85.3042, "matched_fragments": 1781, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseostramineus", "strain": "strain=JCM 4385", "accession": "GCA_014649635.1", "taxid": 66898, "species_taxid": 66898, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2766, "matched_fragments": 1630, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseostramineus", "strain": "strain=CECT 3273", "accession": "GCA_014203535.1", "taxid": 66898, "species_taxid": 66898, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2715, "matched_fragments": 1634, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoruber", "strain": "strain=NRRL B-1818", "accession": "GCA_001418585.1", "taxid": 1943, "species_taxid": 1943, "relation_to_type": "type", "validated": true, "ani": 85.1768, "matched_fragments": 1459, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces glaucescens", "strain": "strain=NRRL B-2706", "accession": "GCA_002154375.1", "taxid": 1907, "species_taxid": 1907, "relation_to_type": "type", "validated": true, "ani": 85.122, "matched_fragments": 1357, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces viridosporus", "strain": "strain=NRRL 2414", "accession": "GCA_002078235.1", "taxid": 67581, "species_taxid": 67581, "relation_to_type": "type", "validated": true, "ani": 85.1083, "matched_fragments": 1324, "total_fragments": 2963, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nigra", "strain": "strain=452", "accession": "GCA_003074055.1", 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