{ "type": "genome", "identifier": "GCF_008806775.1", "organism": "Flavobacterium luteum", "title": "Flavobacterium luteum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008806775.1", "bioproject": "PRJNA224116", "biosample": "SAMN12838234", "wgs_master": "WAEM00000000.1", "refseq_category": "reference genome", "taxid": "2026654", "species_taxid": "2026654", "organism_name": "Flavobacterium luteum", "infraspecific_name": "strain=NBRC 112527", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/02", "asm_name": "ASM880677v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_008806775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/806/775/GCF_008806775.1_ASM880677v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3413843", "genome_size_ungapped": "3413843", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008806775.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2872", "protein_coding_gene_count": "2808", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-02", "dateModified": "2019-10-02", "datePublished": "2019-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium luteum" ], "sample_taxid": [ "2026654" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.946 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3413843", "Number of Sequences": "41", "Longest Sequences (bp)": "855421", "N50 (bp)": "425016", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.5", "Number of CDSs": "2797", "Average Protein Length": "352.3", "Coding Ratio (%)": "86.6", "Number of rRNAs": "4", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1118, "total_fragments": 1119, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 79.5104, "matched_fragments": 458, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 78.9382, "matched_fragments": 336, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 78.9232, "matched_fragments": 339, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 78.5737, "matched_fragments": 288, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 78.4622, "matched_fragments": 304, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=LMG 4008", "accession": "GCA_000757385.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.3893, "matched_fragments": 295, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=ATCC 11947", "accession": "GCA_002217235.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.3443, "matched_fragments": 299, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=NBRC 15052", "accession": "GCA_006539785.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.3429, "matched_fragments": 286, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xanthum", "strain": "strain=DSM 3661", "accession": "GCA_900142695.1", "taxid": 69322, "species_taxid": 69322, "relation_to_type": "type", "validated": true, "ani": 78.3046, "matched_fragments": 286, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 78.3017, "matched_fragments": 315, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 78.2576, "matched_fragments": 307, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.2235, "matched_fragments": 304, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=ATCC 49418", "accession": "GCA_002217405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 78.1593, "matched_fragments": 235, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_002222055.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 78.1421, "matched_fragments": 264, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=FPG3", "accession": "GCA_000754405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 78.1339, "matched_fragments": 238, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium reichenbachii", "strain": "strain=DSM 21791", "accession": "GCA_002217435.1", "taxid": 362418, "species_taxid": 362418, "relation_to_type": "type", "validated": true, "ani": 78.1249, "matched_fragments": 265, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_003148525.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 78.1061, "matched_fragments": 266, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 78.0748, "matched_fragments": 280, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium granuli", "strain": "strain=DSM 17797", "accession": "GCA_003003155.1", "taxid": 280093, "species_taxid": 280093, "relation_to_type": "type", "validated": true, "ani": 78.0639, "matched_fragments": 280, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 78.0626, "matched_fragments": 277, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium granuli", "strain": "strain=DSM 19729", "accession": "GCA_900129705.1", "taxid": 280093, "species_taxid": 280093, "relation_to_type": "type", "validated": true, "ani": 78.0542, "matched_fragments": 282, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydrocarbonoxydans", "strain": "strain=GA093", "accession": "GCA_009789235.1", "taxid": 2683249, "species_taxid": 2683249, "relation_to_type": "type", "validated": true, "ani": 78.0415, "matched_fragments": 277, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.0147, "matched_fragments": 254, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hiemivividum", "strain": "strain=TSA-D2", "accession": "GCA_004349145.1", "taxid": 2541734, "species_taxid": 2541734, "relation_to_type": "type", "validated": true, "ani": 77.9748, "matched_fragments": 278, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 77.7324, "matched_fragments": 243, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.5418, "matched_fragments": 180, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 76.1909, "matched_fragments": 85, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.1625, "matched_fragments": 88, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter pelagius", "strain": "strain=DF109", "accession": "GCA_017581925.1", "taxid": 2819985, "species_taxid": 2819985, "relation_to_type": "type", "validated": true, "ani": 76.0776, "matched_fragments": 52, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008806775.1", "gtdb_species": "s__Flavobacterium luteum", "ani": 100.0, "matched_fragments": 1118, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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"total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000757385.1", "gtdb_species": "s__Flavobacterium aquatile", "ani": 78.3839, "matched_fragments": 294, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002813295.1", "gtdb_species": "s__Flavobacterium sp002813295", "ani": 78.1721, "matched_fragments": 332, "total_fragments": 1119, 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