{ "type": "genome", "identifier": "GCF_008807015.1", "organism": "Neisseria zalophi", "title": "Neisseria zalophi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Illinois Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008807015.1", "bioproject": "PRJNA224116", "biosample": "SAMN09853484", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "640030", "species_taxid": "640030", "organism_name": "Neisseria zalophi", "infraspecific_name": "strain=ATCC BAA-2455", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/03", "asm_name": "ASM880701v1", "asm_submitter": "Illinois Institute of Technology", "gbrs_paired_asm": "GCA_008807015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/807/015/GCF_008807015.1_ASM880701v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2423693", "genome_size_ungapped": "2423693", "gc_percent": "44.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008807015.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "2285", "protein_coding_gene_count": "2177", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-03", "dateModified": "2019-10-03", "datePublished": "2019-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria zalophi" ], "sample_taxid": [ "640030" ], "sample_host_organism": [ "Zalophus californianus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: The Marine Mammal Center facilities in California" ], "sample_host_location_id": [], "data_size": "0.676 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2423693", "Number of Sequences": "1", "Longest Sequences (bp)": "2423693", "N50 (bp)": "2423693", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "2208", "Average Protein Length": "307.4", "Coding Ratio (%)": "84.0", "Number of rRNAs": "12", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria zalophi", "strain": "strain=ATCC BAA-2455", "accession": "GCA_008807015.1", "taxid": 640030, "species_taxid": 640030, "relation_to_type": "type", "validated": true, "ani": 100.0, 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