{ "type": "genome", "identifier": "GCF_008807375.1", "organism": "Metapseudomonas lalkuanensis", "title": "Metapseudomonas lalkuanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Centre for Cell Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008807375.1", "bioproject": "PRJNA224116", "biosample": "SAMN12607303", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2604832", "species_taxid": "2604832", "organism_name": "Metapseudomonas lalkuanensis", "infraspecific_name": "strain=PE08", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/03", "asm_name": "ASM880737v1", "asm_submitter": "National Centre for Cell Science", "gbrs_paired_asm": "GCA_008807375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/807/375/GCF_008807375.1_ASM880737v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6056953", "genome_size_ungapped": "6056953", "gc_percent": "64.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008807375.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5581", "protein_coding_gene_count": "5440", "non_coding_gene_count": "92", "pubmed_id": "33174829" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-03", "dateModified": "2019-10-03", "datePublished": "2019-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Metapseudomonas lalkuanensis" ], "sample_taxid": [ "2604832" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Lalkaun Village Uttarakhand" ], "sample_host_location_id": [], "data_size": "1.667 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6056953", "Number of Sequences": "1", "Longest Sequences (bp)": "6056953", "N50 (bp)": "6056953", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "5515", "Average Protein Length": "324.7", "Coding Ratio (%)": "88.7", "Number of rRNAs": "16", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas furukawaii", "strain": "strain=KF707", "accession": "GCA_002355475.1", "taxid": 1149133, "species_taxid": 1149133, "relation_to_type": "type", "validated": true, "ani": 86.7632, 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"strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 82.6979, "matched_fragments": 1047, "total_fragments": 2018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 82.6291, "matched_fragments": 884, "total_fragments": 2018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas campi", "strain": "strain=S1-A32-2", "accession": "GCA_013200955.2", "taxid": 2731681, "species_taxid": 2731681, "relation_to_type": "type", "validated": true, "ani": 82.6254, "matched_fragments": 910, "total_fragments": 2018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 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