{
    "type": "genome",
    "identifier": "GCF_008824185.1",
    "organism": "Paracoccus pantotrophus",
    "title": "Paracoccus pantotrophus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "RWTH Aachen University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008824185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10780923",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "82367",
        "species_taxid": "82367",
        "organism_name": "Paracoccus pantotrophus",
        "infraspecific_name": "strain=DSM 2944",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/06",
        "asm_name": "ASM882418v1",
        "asm_submitter": "RWTH Aachen University",
        "gbrs_paired_asm": "GCA_008824185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/824/185/GCF_008824185.1_ASM882418v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4409379",
        "genome_size_ungapped": "4409379",
        "gc_percent": "67.500000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008824185.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4384",
        "protein_coding_gene_count": "4188",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-06",
    "dateModified": "2019-10-06",
    "datePublished": "2019-10-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paracoccus pantotrophus"
        ],
        "sample_taxid": [
            "82367"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Delft"
        ],
        "sample_host_location_id": [],
        "data_size": "1.190 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4409379",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "2248278",
        "N50 (bp)": "2248278",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.6",
        "Number of CDSs": "4360",
        "Average Protein Length": "303.8",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "9",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paracoccus pantotrophus",
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                "relation_to_type": "type",
                "validated": true,
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            {
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            },
            {
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                "species_taxid": 34007,
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            {
                "organism_name": "Paracoccus versutus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Paracoccus denitrificans",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus binzhouensis",
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                "accession": "GCA_016446475.1",
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            },
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                "organism_name": "Paracoccus thiocyanatus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Paracoccus mutanolyticus",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus shandongensis",
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                "taxid": 2816048,
                "species_taxid": 2816048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7231,
                "matched_fragments": 708,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus everestensis",
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                "species_taxid": 2903900,
                "relation_to_type": "type",
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                "ani": 80.3366,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus salsus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus tegillarcae",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_008824185.1",
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                "mean_intra_species_ani": "N/A",
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    },
    "_bac2feature": {
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}