{
    "type": "genome",
    "identifier": "GCF_008830365.1",
    "organism": "Serratia proteamaculans",
    "title": "Serratia proteamaculans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gothenburg - CCUG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008830365.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12839049",
        "wgs_master": "WBKI00000000.1",
        "refseq_category": "na",
        "taxid": "28151",
        "species_taxid": "28151",
        "organism_name": "Serratia proteamaculans",
        "infraspecific_name": "strain=CCUG 14510",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/06",
        "asm_name": "ASM883036v1",
        "asm_submitter": "University of Gothenburg - CCUG",
        "gbrs_paired_asm": "GCA_008830365.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/830/365/GCF_008830365.1_ASM883036v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5072367",
        "genome_size_ungapped": "5072367",
        "gc_percent": "55.000000",
        "replicon_count": "0",
        "scaffold_count": "21",
        "contig_count": "21",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008830365.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "4793",
        "protein_coding_gene_count": "4641",
        "non_coding_gene_count": "103",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-06",
    "dateModified": "2019-10-06",
    "datePublished": "2019-10-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Serratia proteamaculans"
        ],
        "sample_taxid": [
            "28151"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.437 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5072367",
        "Number of Sequences": "21",
        "Longest Sequences (bp)": "1896836",
        "N50 (bp)": "931850",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.1",
        "Number of CDSs": "4687",
        "Average Protein Length": "317.8",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "78",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Serratia proteamaculans",
                "strain": "strain=CCUG 14510",
                "accession": "GCA_008830365.1",
                "taxid": 28151,
                "species_taxid": 28151,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1683,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Serratia quinivorans",
                "strain": "strain=NCTC11544",
                "accession": "GCA_900457075.1",
                "taxid": 137545,
                "species_taxid": 137545,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.9931,
                "matched_fragments": 1511,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia liquefaciens",
                "strain": "strain=ATCC 27592",
                "accession": "GCA_000422085.1",
                "taxid": 614,
                "species_taxid": 614,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2561,
                "matched_fragments": 1463,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia grimesii",
                "strain": "strain=NCTC11543",
                "accession": "GCA_900456935.1",
                "taxid": 82995,
                "species_taxid": 82995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9032,
                "matched_fragments": 1416,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia grimesii",
                "strain": "strain=NBRC 13537",
                "accession": "GCA_001590905.1",
                "taxid": 82995,
                "species_taxid": 82995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9029,
                "matched_fragments": 1395,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia inhibens",
                "strain": "strain=S40",
                "accession": "GCA_003591175.1",
                "taxid": 2338073,
                "species_taxid": 2338073,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.354,
                "matched_fragments": 1368,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia plymuthica",
                "strain": "strain=FDAARGOS_895",
                "accession": "GCA_016027675.1",
                "taxid": 82996,
                "species_taxid": 82996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3342,
                "matched_fragments": 1396,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia plymuthica",
                "strain": "strain=NBRC 102599",
                "accession": "GCA_001590925.1",
                "taxid": 82996,
                "species_taxid": 82996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2602,
                "matched_fragments": 1363,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2185,
                "matched_fragments": 1249,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2912,
                "matched_fragments": 1232,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
                "species_taxid": 2703793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1931,
                "matched_fragments": 1228,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella rivi",
                "strain": "strain=FC061912-K",
                "accession": "GCA_019049655.1",
                "taxid": 2816249,
                "species_taxid": 2816249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3873,
                "matched_fragments": 612,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella ecdela",
                "strain": "strain=FRB 231",
                "accession": "GCA_019049625.1",
                "taxid": 2816250,
                "species_taxid": 2816250,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2175,
                "matched_fragments": 577,
                "total_fragments": 1683,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008830365.1",
                "gtdb_species": "s__Serratia proteamaculans",
                "ani": 100.0,
                "matched_fragments": 1683,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "95.51",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900457075.1",
                "gtdb_species": "s__Serratia quinivorans",
                "ani": 91.9931,
                "matched_fragments": 1511,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "95.64",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_013337185.1",
                "gtdb_species": "s__Serratia proteamaculans_D",
                "ani": 91.6472,
                "matched_fragments": 1497,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "95.57",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_012719855.1",
                "gtdb_species": "s__Serratia liquefaciens_A",
                "ani": 88.3899,
                "matched_fragments": 1426,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.92",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000422085.1",
                "gtdb_species": "s__Serratia liquefaciens",
                "ani": 88.2617,
                "matched_fragments": 1462,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 25,
                "status": "-"
            },
            {
                "accession": "GCF_001590905.1",
                "gtdb_species": "s__Serratia grimesii",
                "ani": 87.9155,
                "matched_fragments": 1393,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "98.89",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_003591175.1",
                "gtdb_species": "s__Serratia inhibens",
                "ani": 87.3466,
                "matched_fragments": 1369,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.90",
                "min_intra_species_ani": "95.73",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001590925.1",
                "gtdb_species": "s__Serratia plymuthica",
                "ani": 87.2602,
                "matched_fragments": 1363,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_018336935.1",
                "gtdb_species": "s__Serratia plymuthica_B",
                "ani": 87.2365,
                "matched_fragments": 1372,
                "total_fragments": 1683,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.158,
        "cell_length": 0.113,
        "doubling_h": -0.246,
        "growth_tmp": 29.0,
        "optimum_tmp": 26.0,
        "optimum_ph": 6.8,
        "genome_size": 5495657.75,
        "gc_content": 53.093,
        "coding_genes": 4970.5,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 83.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Serratia",
        "proteamaculans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}