{ "type": "genome", "identifier": "GCF_008831155.1", "organism": "Gulosibacter chungangensis", "title": "Gulosibacter chungangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Institute of Forest Ecology Environment and Protection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008831155.1", "bioproject": "PRJNA224116", "biosample": "SAMN12810918", "wgs_master": "WBKB00000000.1", "refseq_category": "reference genome", "taxid": "979746", "species_taxid": "979746", "organism_name": "Gulosibacter chungangensis", "infraspecific_name": "strain=KCTC 13959", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/06", "asm_name": "ASM883115v1", "asm_submitter": "Research Institute of Forest Ecology Environment and Protection", "gbrs_paired_asm": "GCA_008831155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/831/155/GCF_008831155.1_ASM883115v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3238579", "genome_size_ungapped": "3238579", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008831155.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "2968", "protein_coding_gene_count": "2857", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-06", "dateModified": "2019-10-06", "datePublished": "2019-10-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Gulosibacter chungangensis" ], "sample_taxid": [ "979746" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3238579", "Number of Sequences": "21", "Longest Sequences (bp)": "754699", "N50 (bp)": "316558", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "2920", "Average Protein Length": "332.7", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gulosibacter chungangensis", "strain": "strain=KCTC 13959", "accession": "GCA_008831155.1", "taxid": 979746, "species_taxid": 979746, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1068, "total_fragments": 1069, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=DSM 13485", "accession": "GCA_000425685.1", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 81.1526, "matched_fragments": 501, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=ON4", "accession": "GCA_003010915.2", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 81.1213, "matched_fragments": 529, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter faecalis", "strain": "strain=B187", "accession": "GCA_000381765.1", "taxid": 272240, "species_taxid": 272240, "relation_to_type": "type", "validated": true, "ani": 78.3497, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium luteum", "strain": "strain=A18JL200", "accession": "GCA_015277875.1", "taxid": 2782167, "species_taxid": 2782167, "relation_to_type": "type", "validated": true, "ani": 77.1082, "matched_fragments": 120, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux ginsengi", "strain": "strain=CGMCC 4.3491", "accession": "GCA_900107435.1", "taxid": 381665, "species_taxid": 381665, "relation_to_type": "type", "validated": true, "ani": 77.1045, "matched_fragments": 112, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces subbeticus", "strain": "strain=DSM 16689", "accession": "GCA_000421565.1", "taxid": 293890, "species_taxid": 293890, "relation_to_type": "type", "validated": true, "ani": 76.7317, "matched_fragments": 120, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces luteolus", "strain": "strain=JCM 11431", "accession": "GCA_009729855.1", "taxid": 88373, "species_taxid": 88373, "relation_to_type": "type", "validated": true, "ani": 76.6264, "matched_fragments": 121, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008831155.1", "gtdb_species": "s__Gulosibacter chungangensis", "ani": 100.0, "matched_fragments": 1068, "total_fragments": 1069, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Gulosibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000425685.1", "gtdb_species": "s__Gulosibacter molinativorax", "ani": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gulosibacter", "chungangensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }