{ "type": "genome", "identifier": "GCF_008831305.1", "organism": "Kocuria coralli", "title": "Kocuria coralli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "South China Sea Institute of Oceanology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008831305.1", "bioproject": "PRJNA224116", "biosample": "SAMN11519548", "wgs_master": "SZWF00000000.1", "refseq_category": "reference genome", "taxid": "1461025", "species_taxid": "1461025", "organism_name": "Kocuria coralli", "infraspecific_name": "strain=SCSIO 13007", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/30", "asm_name": "ASM883130v1", "asm_submitter": "South China Sea Institute of Oceanology", "gbrs_paired_asm": "GCA_008831305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/831/305/GCF_008831305.1_ASM883130v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3428361", "genome_size_ungapped": "3428319", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "84", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008831305.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3077", "protein_coding_gene_count": "2970", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-30", "dateModified": "2019-09-30", "datePublished": "2019-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Kocuria coralli" ], "sample_taxid": [ "1461025" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Luhuitou fringing reef, Sanya" ], "sample_host_location_id": [], "data_size": "0.938 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3428361", "Number of Sequences": "71", "Longest Sequences (bp)": "379194", "N50 (bp)": "188027", "Gap Ratio (%)": "0.001225", "GCcontent (%)": "68.6", "Number of CDSs": "3003", "Average Protein Length": "340.7", "Coding Ratio (%)": "89.5", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kocuria coralli", "strain": "strain=SCSIO 13007", "accession": "GCA_008831305.1", "taxid": 1461025, "species_taxid": 1461025, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1119, 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"organism_name": "Kocuria flava", "strain": "strain=HO-9041", "accession": "GCA_001482365.1", "taxid": 446860, "species_taxid": 446860, "relation_to_type": "type", "validated": true, "ani": 79.5952, "matched_fragments": 432, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria tytonicola", "strain": "strain=DSM 104133", "accession": "GCA_003687455.1", "taxid": 2055946, "species_taxid": 2055946, "relation_to_type": "type", "validated": true, "ani": 79.512, "matched_fragments": 314, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria sediminis", "strain": "strain=JCM 17929", "accession": "GCA_009735315.1", "taxid": 1038857, "species_taxid": 1038857, "relation_to_type": "type", "validated": true, "ani": 79.3873, "matched_fragments": 432, "total_fragments": 1123, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria varians", "strain": "strain=NBRC 15358", 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