{
    "type": "genome",
    "identifier": "GCF_008838325.1",
    "organism": "Tepidiforma bonchosmolovskayae",
    "title": "Tepidiforma bonchosmolovskayae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center of Biotechnology RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008838325.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12500377",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2601677",
        "species_taxid": "2601677",
        "organism_name": "Tepidiforma bonchosmolovskayae",
        "infraspecific_name": "strain=3753O",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/04",
        "asm_name": "ASM883832v1",
        "asm_submitter": "Research Center of Biotechnology RAS",
        "gbrs_paired_asm": "GCA_008838325.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/838/325/GCF_008838325.1_ASM883832v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2746948",
        "genome_size_ungapped": "2746948",
        "gc_percent": "70.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008838325.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "2758",
        "protein_coding_gene_count": "2692",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-04",
    "dateModified": "2019-10-04",
    "datePublished": "2019-10-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tepidiforma bonchosmolovskayae"
        ],
        "sample_taxid": [
            "2601677"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Chukotka"
        ],
        "sample_host_location_id": [],
        "data_size": "0.735 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 59.0,
            "max": 59.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2746948",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2746948",
        "N50 (bp)": "2746948",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.9",
        "Number of CDSs": "2730",
        "Average Protein Length": "310.4",
        "Coding Ratio (%)": "92.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tepidiforma bonchosmolovskayae",
                "strain": "strain=3753O",
                "accession": "GCA_008838325.1",
                "taxid": 2601677,
                "species_taxid": 2601677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 915,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vulcaniibacterium gelatinicum",
                "strain": "strain=R-5-52-3",
                "accession": "GCA_008033445.1",
                "taxid": 2598725,
                "species_taxid": 2598725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0604,
                "matched_fragments": 62,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachybacterium squillarum",
                "strain": "strain=M-6-3",
                "accession": "GCA_000225825.2",
                "taxid": 661979,
                "species_taxid": 661979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0546,
                "matched_fragments": 75,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Euzebya pacifica",
                "strain": "strain=DY32-46",
                "accession": "GCA_003344865.1",
                "taxid": 1608957,
                "species_taxid": 1608957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9304,
                "matched_fragments": 80,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas metalli",
                "strain": "strain=CF5-1",
                "accession": "GCA_000747155.1",
                "taxid": 948077,
                "species_taxid": 948077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8849,
                "matched_fragments": 64,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paroceanicella profunda",
                "strain": "strain=D4M1",
                "accession": "GCA_005887635.2",
                "taxid": 2579971,
                "species_taxid": 2579971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8319,
                "matched_fragments": 83,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura roseirufa",
                "strain": "",
                "accession": "GCA_900659635.1",
                "taxid": 2094049,
                "species_taxid": 2094049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8149,
                "matched_fragments": 126,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura macrotermitis",
                "strain": "strain=RB68",
                "accession": "GCA_009604375.1",
                "taxid": 2585200,
                "species_taxid": 2585200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7185,
                "matched_fragments": 175,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008838325.1",
                "gtdb_species": "s__Tepidiforma bonchosmolovskayae",
                "ani": 100.0,
                "matched_fragments": 915,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__Tepidiforma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002563855.1",
                "gtdb_species": "s__Tepidiforma sp002563855",
                "ani": 91.9369,
                "matched_fragments": 857,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__Tepidiforma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003104995.1",
                "gtdb_species": "s__FeB-14 sp003104995",
                "ani": 78.425,
                "matched_fragments": 365,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__FeB-14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016234445.1",
                "gtdb_species": "s__JACRBT01 sp016234445",
                "ani": 78.0169,
                "matched_fragments": 321,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__JACRBT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016703545.1",
                "gtdb_species": "s__JACPOQ01 sp016703545",
                "ani": 77.8398,
                "matched_fragments": 288,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__JACPOQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015075555.1",
                "gtdb_species": "s__UCB2 sp015075555",
                "ani": 77.7658,
                "matched_fragments": 209,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__UCB2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016719395.1",
                "gtdb_species": "s__FeB-14 sp016719395",
                "ani": 77.73,
                "matched_fragments": 269,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__FeB-14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_003577245.1",
                "gtdb_species": "s__UCB2 sp003577245",
                "ani": 77.7148,
                "matched_fragments": 145,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__UCB2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.69",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_011055725.1",
                "gtdb_species": "s__FeB-14 sp011055725",
                "ani": 77.6626,
                "matched_fragments": 258,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__FeB-14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009838385.1",
                "gtdb_species": "s__UBA2991 sp009838385",
                "ani": 77.5995,
                "matched_fragments": 114,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__UBA2991",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011048275.1",
                "gtdb_species": "s__HRBIN29 sp011048275",
                "ani": 77.1819,
                "matched_fragments": 225,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__HRBIN29",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_013822275.1",
                "gtdb_species": "s__PNKC01 sp013822275",
                "ani": 77.1311,
                "matched_fragments": 195,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__PNKC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009840965.1",
                "gtdb_species": "s__VXMT01 sp009840965",
                "ani": 75.6545,
                "matched_fragments": 80,
                "total_fragments": 915,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA2979;f__UBA2979;g__VXMT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.91",
                "min_intra_species_ani": "96.91",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Tepidiforma",
        "bonchosmolovskayae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}