{ "type": "genome", "identifier": "GCF_008843165.1", "organism": "Ornithinimicrobium pratense", "title": "Ornithinimicrobium pratense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biotechnology Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008843165.1", "bioproject": "PRJNA224116", "biosample": "SAMN12634227", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2593973", "species_taxid": "2593973", "organism_name": "Ornithinimicrobium pratense", "infraspecific_name": "strain=W204", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/07", "asm_name": "ASM884316v1", "asm_submitter": "Biotechnology Research Institute", "gbrs_paired_asm": "GCA_008843165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/843/165/GCF_008843165.1_ASM884316v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3539411", "genome_size_ungapped": "3539411", "gc_percent": "71.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008843165.1-RS_2024_03_22", "annotation_date": "2024-03-22", "total_gene_count": "3278", "protein_coding_gene_count": "3177", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-07", "dateModified": "2019-10-07", "datePublished": "2019-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Ornithinimicrobium pratense" ], "sample_taxid": [ "2593973" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiadengyu national forest park" ], "sample_host_location_id": [], "data_size": "0.951 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3539411", "Number of Sequences": "1", "Longest Sequences (bp)": "3539411", "N50 (bp)": "3539411", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "3291", "Average Protein Length": "327.0", "Coding Ratio (%)": "91.2", "Number of rRNAs": "6", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ornithinimicrobium pratense", "strain": "strain=W204", "accession": "GCA_008843165.1", "taxid": 2593973, "species_taxid": 2593973, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1179, "total_fragments": 1179, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ornithinimicrobium flavum", "strain": "strain=CPCC 203535", "accession": "GCA_004526345.1", "taxid": 1288636, "species_taxid": 1288636, "relation_to_type": "type", "validated": true, "ani": 81.7862, "matched_fragments": 734, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium pekingense", "strain": "strain=DSM 21552", "accession": "GCA_000421185.1", "taxid": 384677, "species_taxid": 384677, "relation_to_type": "type", "validated": true, "ani": 81.6029, "matched_fragments": 688, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium pekingense", "strain": "strain=CGMCC 1.5362", "accession": "GCA_014644955.1", "taxid": 384677, "species_taxid": 384677, "relation_to_type": "type", "validated": true, "ani": 81.465, "matched_fragments": 698, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium kibberense", "strain": "strain=DSM 17687", "accession": "GCA_006519705.1", "taxid": 282060, "species_taxid": 282060, "relation_to_type": "type", "validated": true, "ani": 81.4522, "matched_fragments": 631, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium humiphilum", "strain": "strain=DSM 12362", "accession": "GCA_006716885.1", "taxid": 125288, "species_taxid": 125288, "relation_to_type": "type", "validated": true, "ani": 81.2966, "matched_fragments": 657, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium avium", "strain": "strain=AMA3305", "accession": "GCA_003351765.1", "taxid": 2283195, "species_taxid": 2283195, "relation_to_type": "type", "validated": true, "ani": 81.2009, "matched_fragments": 671, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus marinus", "strain": "strain=DSM 15273", "accession": "GCA_008386315.1", "taxid": 247333, "species_taxid": 247333, "relation_to_type": "type", "validated": true, "ani": 80.9859, "matched_fragments": 620, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus chungangensis", "strain": "strain=CCUG 59777", "accession": "GCA_006337125.1", "taxid": 767452, "species_taxid": 767452, "relation_to_type": "type", "validated": true, "ani": 80.9648, "matched_fragments": 622, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium tianjinense", "strain": "strain=CGMCC 1.12160", "accession": "GCA_014636495.1", "taxid": 1195761, "species_taxid": 1195761, "relation_to_type": "type", "validated": true, "ani": 80.847, "matched_fragments": 616, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus kebangsaanensis", "strain": "strain=P2D13-UKM", "accession": "GCA_008919445.1", "taxid": 2602069, "species_taxid": 2602069, "relation_to_type": "type", "validated": true, "ani": 80.7847, "matched_fragments": 606, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus sediminis", "strain": "strain=GP-T3-3", "accession": "GCA_004153545.1", "taxid": 2306021, "species_taxid": 2306021, "relation_to_type": "type", "validated": true, "ani": 80.7802, "matched_fragments": 633, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium sediminis", "strain": "strain=EGI L100131", "accession": "GCA_021272345.1", "taxid": 2904603, "species_taxid": 2904603, "relation_to_type": "type", "validated": true, "ani": 79.5341, "matched_fragments": 484, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinicoccus hortensis", "strain": "strain=HKI0125", "accession": "GCA_009602515.1", "taxid": 82346, "species_taxid": 82346, "relation_to_type": "type", "validated": true, "ani": 79.4802, "matched_fragments": 487, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium murale", "strain": "strain=DSM 22056", "accession": "GCA_003352835.1", "taxid": 1050153, "species_taxid": 1050153, "relation_to_type": "type", "validated": true, "ani": 78.783, "matched_fragments": 321, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008843165.1", "gtdb_species": "s__Serinicoccus pratense", "ani": 100.0, "matched_fragments": 1179, "total_fragments": 1179, "gtdb_taxonomy": 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