{ "type": "genome", "identifier": "GCF_008868685.1", "organism": "Streptomyces triticiradicis", "title": "Streptomyces triticiradicis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008868685.1", "bioproject": "PRJNA224116", "biosample": "SAMN12869299", "wgs_master": "WBKG00000000.1", "refseq_category": "reference genome", "taxid": "2651189", "species_taxid": "2651189", "organism_name": "Streptomyces triticiradicis", "infraspecific_name": "strain=NEAU-H2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/07", "asm_name": "ASM886868v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_008868685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/868/685/GCF_008868685.1_ASM886868v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9921301", "genome_size_ungapped": "9921221", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "127", "contig_count": "127", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008868685.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "8881", "protein_coding_gene_count": "8505", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-07", "dateModified": "2019-10-07", "datePublished": "2019-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces triticiradicis" ], "sample_taxid": [ "2651189" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Zhumadian" ], "sample_host_location_id": [], "data_size": "2.673 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9921301", "Number of Sequences": "127", "Longest Sequences (bp)": "620311", "N50 (bp)": "170991", "Gap Ratio (%)": "0.000806", "GCcontent (%)": "71.5", "Number of CDSs": "8944", "Average Protein Length": "315.4", "Coding Ratio (%)": "85.3", "Number of rRNAs": "3", "Number of tRNAs": "94", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces triticiradicis", "strain": "strain=NEAU-H2", "accession": "GCA_008868685.1", "taxid": 2651189, "species_taxid": 2651189, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3230, "total_fragments": 3240, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces populi", "strain": "strain=A249", "accession": "GCA_002911015.1", "taxid": 2058924, "species_taxid": 2058924, "relation_to_type": "type", "validated": true, "ani": 95.0763, "matched_fragments": 2528, "total_fragments": 3240, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces albiflavescens", "strain": "strain=CGMCC 4.7111", "accession": "GCA_014645835.1", "taxid": 1623582, "species_taxid": 1623582, "relation_to_type": "type", "validated": true, "ani": 86.458, "matched_fragments": 2047, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dengpaensis", "strain": "strain=XZHG99", "accession": "GCA_002946835.1", "taxid": 2049881, "species_taxid": 2049881, "relation_to_type": "type", "validated": true, "ani": 86.4112, "matched_fragments": 1730, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mirabilis", "strain": "strain=JCM 4551", "accession": "GCA_014650275.1", "taxid": 68239, "species_taxid": 68239, "relation_to_type": "suspected-type", "validated": true, "ani": 85.855, "matched_fragments": 2007, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces olivochromogenes", "strain": "strain=DSM 40451", "accession": "GCA_001514115.1", "taxid": 1963, "species_taxid": 1963, "relation_to_type": "type", "validated": true, "ani": 85.731, "matched_fragments": 2058, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fagopyri", "strain": "strain=QMT-28", "accession": "GCA_009498275.1", "taxid": 2662397, "species_taxid": 2662397, "relation_to_type": "type", "validated": true, "ani": 85.6698, "matched_fragments": 1923, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=MA-4680", "accession": "GCA_000009765.2", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 85.0788, "matched_fragments": 1873, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=DSM 46492", "accession": "GCA_001514135.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 85.0645, "matched_fragments": 1863, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=NBRC 14893", "accession": "GCA_005405965.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 84.9083, "matched_fragments": 1945, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces umbrinus", "strain": "strain=JCM 4521", "accession": "GCA_014650195.1", "taxid": 67370, "species_taxid": 67370, "relation_to_type": "type", "validated": true, "ani": 83.9161, "matched_fragments": 1906, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 83.7757, "matched_fragments": 1881, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces glomeratus", "strain": "strain=DSM 41457", "accession": "GCA_021462825.1", "taxid": 284452, "species_taxid": 284452, "relation_to_type": "type", "validated": true, "ani": 83.6751, "matched_fragments": 1651, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hokutonensis", "strain": "strain=R1-NS-10", "accession": "GCA_000376565.1", "taxid": 1306990, "species_taxid": 1306990, "relation_to_type": "type", "validated": true, "ani": 83.6707, "matched_fragments": 1874, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 83.5257, "matched_fragments": 1601, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caniscabiei", "strain": "strain=NE06-02D", "accession": "GCA_014930365.1", "taxid": 2746961, "species_taxid": 2746961, "relation_to_type": "type", "validated": true, "ani": 83.5172, "matched_fragments": 1787, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces minutiscleroticus", "strain": "strain=JCM 4790", "accession": "GCA_014650875.1", "taxid": 68238, "species_taxid": 68238, "relation_to_type": "type", "validated": true, "ani": 83.5039, "matched_fragments": 1676, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces neyagawaensis", "strain": "strain=JCM 4796", "accession": "GCA_023516595.1", "taxid": 42238, "species_taxid": 42238, "relation_to_type": "type", "validated": true, "ani": 83.3563, "matched_fragments": 1772, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces geranii", "strain": "strain=A301", "accession": "GCA_002954775.1", "taxid": 2058923, "species_taxid": 2058923, "relation_to_type": "type", "validated": true, "ani": 83.2691, "matched_fragments": 1603, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces melanogenes", "strain": "strain=JCM 4398", "accession": "GCA_014649795.1", "taxid": 67326, "species_taxid": 67326, "relation_to_type": "type", "validated": true, 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"status": "below_threshold" }, { "organism_name": "Bifidobacterium phasiani", "strain": "strain=6T3", "accession": "GCA_019331775.1", "taxid": 2834431, "species_taxid": 2834431, "relation_to_type": "type", "validated": true, "ani": 75.5228, "matched_fragments": 203, "total_fragments": 3240, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002911015.1", "gtdb_species": "s__Streptomyces populi", "ani": 95.0922, "matched_fragments": 2526, "total_fragments": 3240, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.17", "min_intra_species_ani": "95.17", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000725495.1", "gtdb_species": 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86.3809, "matched_fragments": 1734, "total_fragments": 3240, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014650275.1", "gtdb_species": "s__Streptomyces mirabilis", "ani": 85.8147, "matched_fragments": 2015, "total_fragments": 3240, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.2382, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.80", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_001514115.1", "gtdb_species": "s__Streptomyces olivochromogenes", "ani": 85.7168, 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