{ "type": "genome", "identifier": "GCF_008905045.1", "organism": "Streptomyces albicerus", "title": "Streptomyces albicerus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tarim University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008905045.1", "bioproject": "PRJNA224116", "biosample": "SAMN12712261", "wgs_master": "VWMY00000000.1", "refseq_category": "reference genome", "taxid": "2569859", "species_taxid": "2569859", "organism_name": "Streptomyces albicerus", "infraspecific_name": "strain=TRM68295", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/08", "asm_name": "ASM890504v1", "asm_submitter": "Tarim University", "gbrs_paired_asm": "GCA_008905045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/905/045/GCF_008905045.1_ASM890504v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11977091", "genome_size_ungapped": "11966044", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "200", "contig_count": "200", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008905045.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "10929", "protein_coding_gene_count": "10426", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-08", "dateModified": "2019-10-08", "datePublished": "2019-10-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces albicerus" ], "sample_taxid": [ "2569859" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang" ], "sample_host_location_id": [], "data_size": "3.261 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11977091", "Number of Sequences": "200", "Longest Sequences (bp)": "338206", "N50 (bp)": "138999", "Gap Ratio (%)": "0.092343", "GCcontent (%)": "70.0", "Number of CDSs": "10928", "Average Protein Length": "314.3", "Coding Ratio (%)": "86.0", "Number of rRNAs": "0", "Number of tRNAs": "92", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces umbrinus", "strain": "strain=JCM 4521", "accession": "GCA_014650195.1", "taxid": 67370, "species_taxid": 67370, "relation_to_type": "type", "validated": true, "ani": 89.4156, "matched_fragments": 2599, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phaeochromogenes", "strain": "strain=NRRL B-1248", "accession": "GCA_001418655.1", "taxid": 1923, "species_taxid": 1923, "relation_to_type": "type", "validated": true, "ani": 89.2922, "matched_fragments": 2330, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces aurantiacus", "strain": "strain=NRRL ISP-5412", "accession": "GCA_001418335.1", "taxid": 47760, "species_taxid": 47760, "relation_to_type": "type", "validated": true, "ani": 87.8111, "matched_fragments": 1816, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces scabichelini", "strain": "strain=HC44", "accession": "GCA_011045015.1", "taxid": 2711217, "species_taxid": 2711217, "relation_to_type": "type", "validated": true, "ani": 87.3729, "matched_fragments": 2285, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces montanus", "strain": "strain=NEAU-C151", "accession": "GCA_005786655.1", "taxid": 2580423, "species_taxid": 2580423, "relation_to_type": "type", "validated": true, "ani": 86.8242, "matched_fragments": 2227, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sporangiiformans", "strain": "strain=NEAU-SSA 1", "accession": "GCA_005768555.2", "taxid": 2315329, "species_taxid": 2315329, "relation_to_type": "type", "validated": true, "ani": 86.814, "matched_fragments": 2246, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sporangiiformans", "strain": "strain=NEAU-SSA 1", "accession": "GCA_003568675.1", "taxid": 2315329, "species_taxid": 2315329, "relation_to_type": "type", "validated": true, "ani": 86.7986, "matched_fragments": 2249, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces 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424188, "species_taxid": 424188, "relation_to_type": "type", "validated": true, "ani": 83.7485, "matched_fragments": 2121, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 83.4778, "matched_fragments": 1882, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces glomeratus", "strain": "strain=DSM 41457", "accession": "GCA_021462825.1", "taxid": 284452, "species_taxid": 284452, "relation_to_type": "type", "validated": true, "ani": 83.4375, "matched_fragments": 1635, "total_fragments": 3892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces ardesiacus", "strain": "strain=NBRC 15402", "accession": "GCA_003112575.1", "taxid": 285564, "species_taxid": 285564, 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