{ "type": "genome", "identifier": "GCF_008923185.1", "organism": "Actinomadura rudentiformis", "title": "Actinomadura rudentiformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008923185.1", "bioproject": "PRJNA224116", "biosample": "SAMN12856403", "wgs_master": "WBMT00000000.1", "refseq_category": "reference genome", "taxid": "359158", "species_taxid": "359158", "organism_name": "Actinomadura rudentiformis", "infraspecific_name": "strain=HMC1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/08", "asm_name": "ASM892318v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_008923185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/923/185/GCF_008923185.1_ASM892318v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10704726", "genome_size_ungapped": "10704716", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008923185.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "10042", "protein_coding_gene_count": "9827", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-08", "dateModified": "2019-10-08", "datePublished": "2019-10-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura rudentiformis" ], "sample_taxid": [ "359158" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa:Western Cape Province" ], "sample_host_location_id": [], "data_size": "2.907 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 10.19, "strain_heterogeneity": 71.43, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10704726", "Number of Sequences": "51", "Longest Sequences (bp)": "761826", "N50 (bp)": "345172", "Gap Ratio (%)": "0.000093", "GCcontent (%)": "69.6", "Number of CDSs": "10083", "Average Protein Length": "310.6", "Coding Ratio (%)": "87.8", "Number of rRNAs": "6", "Number of tRNAs": "92", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura rudentiformis", "strain": "strain=HMC1", "accession": "GCA_008923185.1", "taxid": 359158, "species_taxid": 359158, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3540, "total_fragments": 3542, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinomadura barringtoniae", "strain": "strain=GKU 128", "accession": "GCA_017573505.1", "taxid": 1427535, "species_taxid": 1427535, "relation_to_type": "type", "validated": true, "ani": 82.687, "matched_fragments": 1946, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura macrotermitis", "strain": "strain=RB68", "accession": "GCA_009604375.1", "taxid": 2585200, "species_taxid": 2585200, "relation_to_type": "type", "validated": true, "ani": 81.4037, "matched_fragments": 1555, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura hibisca", "strain": "strain=NBRC 15177", "accession": "GCA_001552635.1", "taxid": 68565, "species_taxid": 68565, "relation_to_type": "type", "validated": true, "ani": 81.3904, "matched_fragments": 1578, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura viridis", "strain": "strain=DSM 43175", "accession": "GCA_015751755.1", "taxid": 58110, "species_taxid": 58110, "relation_to_type": "type", "validated": true, "ani": 81.3462, "matched_fragments": 1591, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura kijaniata", "strain": "strain=NBRC 14229", "accession": "GCA_001552175.1", "taxid": 46161, "species_taxid": 46161, "relation_to_type": "type", "validated": true, "ani": 81.3284, "matched_fragments": 1673, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rubrisoli", "strain": "strain=H3C3", "accession": "GCA_004349215.1", "taxid": 2530368, "species_taxid": 2530368, "relation_to_type": "type", "validated": true, "ani": 81.2697, "matched_fragments": 1467, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura namibiensis", "strain": "strain=DSM 44197", "accession": "GCA_014138665.1", "taxid": 182080, "species_taxid": 182080, "relation_to_type": "type", "validated": true, "ani": 81.2535, "matched_fragments": 1719, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura madurae", "strain": "strain=DSM 43067", "accession": "GCA_900115095.1", "taxid": 1993, "species_taxid": 1993, "relation_to_type": "type", "validated": true, "ani": 81.1318, "matched_fragments": 1629, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura meyerae", "strain": "strain=DSM 44715", "accession": "GCA_900188445.1", "taxid": 240840, "species_taxid": 240840, "relation_to_type": "type", "validated": true, "ani": 81.0139, "matched_fragments": 1539, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura darangshiensis", "strain": "strain=DSM 45941", "accession": "GCA_004349235.1", "taxid": 705336, "species_taxid": 705336, "relation_to_type": "type", "validated": true, "ani": 81.0132, "matched_fragments": 1454, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 80.9144, "matched_fragments": 1660, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 80.908, "matched_fragments": 1670, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura macra", "strain": "strain=NBRC 14102", "accession": "GCA_001552215.1", "taxid": 46164, "species_taxid": 46164, "relation_to_type": "type", "validated": true, "ani": 80.8281, "matched_fragments": 1401, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura roseirufa", "strain": "", "accession": "GCA_900659635.1", "taxid": 2094049, "species_taxid": 2094049, "relation_to_type": "type", "validated": true, "ani": 80.7928, "matched_fragments": 1305, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura litoris", "strain": "strain=NEAU-AAG5", "accession": "GCA_009733595.1", "taxid": 2678616, "species_taxid": 2678616, "relation_to_type": "type", "validated": true, "ani": 80.7927, "matched_fragments": 1477, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 80.7394, "matched_fragments": 1450, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura soli", "strain": "strain=14C53", "accession": "GCA_005889715.1", "taxid": 2508997, "species_taxid": 2508997, "relation_to_type": "type", "validated": true, "ani": 80.6953, "matched_fragments": 1344, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 80.6305, "matched_fragments": 1409, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 80.3338, "matched_fragments": 1440, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 80.2865, "matched_fragments": 1281, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura syzygii", "strain": "strain=GKU157", "accession": "GCA_008085905.1", "taxid": 1427538, "species_taxid": 1427538, "relation_to_type": "type", "validated": true, "ani": 80.2714, "matched_fragments": 1484, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rayongensis", "strain": "strain=DSM 102126", "accession": "GCA_009831215.1", "taxid": 1429076, "species_taxid": 1429076, "relation_to_type": "type", "validated": true, "ani": 79.8784, "matched_fragments": 1136, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura atramentaria", "strain": "strain=SF2197", "accession": "GCA_000381885.1", "taxid": 1990, "species_taxid": 1990, "relation_to_type": "type", "validated": true, "ani": 79.7948, "matched_fragments": 1200, "total_fragments": 3542, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 10.19, "strain_heterogeneity": 71.43 }, "gtdb_result": [ { "accession": "GCF_008923185.1", "gtdb_species": "s__Spirillospora rudentiformis", "ani": 100.0, "matched_fragments": 3540, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_017573505.1", "gtdb_species": "s__Spirillospora barringtoniae", "ani": 82.6808, "matched_fragments": 1949, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009793335.1", "gtdb_species": "s__Spirillospora sp009793335", "ani": 81.5308, "matched_fragments": 1717, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001552635.1", "gtdb_species": "s__Spirillospora hibisca", "ani": 81.4036, "matched_fragments": 1574, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009604375.1", "gtdb_species": "s__Spirillospora macrotermitis", "ani": 81.3986, "matched_fragments": 1555, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015751755.1", "gtdb_species": "s__Spirillospora viridis", "ani": 81.3284, "matched_fragments": 1595, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001552175.1", "gtdb_species": "s__Spirillospora kijaniata", "ani": 81.3046, "matched_fragments": 1679, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.32", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013372625.1", "gtdb_species": "s__Spirillospora sp013372625", "ani": 81.2925, "matched_fragments": 1269, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004349215.1", "gtdb_species": "s__Spirillospora rubrisoli", "ani": 81.2848, "matched_fragments": 1463, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004348665.1", "gtdb_species": "s__Spirillospora sp004348665", "ani": 81.2399, "matched_fragments": 1189, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900659615.1", "gtdb_species": "s__Spirillospora fibrosa", "ani": 81.1766, "matched_fragments": 1624, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115095.1", "gtdb_species": "s__Spirillospora madurae", "ani": 81.1453, "matched_fragments": 1624, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013211575.1", "gtdb_species": "s__Spirillospora verrucosospora", "ani": 81.1276, "matched_fragments": 1641, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003001795.1", "gtdb_species": "s__Actinomadura_B viridilutea", "ani": 81.1025, "matched_fragments": 1352, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Actinomadura_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900188445.1", "gtdb_species": "s__Spirillospora meyerae", "ani": 81.0541, "matched_fragments": 1527, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017573545.1", "gtdb_species": "s__Spirillospora nitritigenes", "ani": 80.9444, "matched_fragments": 1661, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.12", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008923365.1", "gtdb_species": "s__Spirillospora montaniterrae", "ani": 80.9196, "matched_fragments": 1587, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001552215.1", "gtdb_species": "s__Spirillospora macra", "ani": 80.8435, "matched_fragments": 1395, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900659635.1", "gtdb_species": "s__Spirillospora roseirufa", "ani": 80.8298, "matched_fragments": 1297, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009733595.1", "gtdb_species": "s__Spirillospora litoris", "ani": 80.7816, "matched_fragments": 1480, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005889715.1", "gtdb_species": "s__Spirillospora sp005889715", "ani": 80.6677, "matched_fragments": 1351, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004348535.1", "gtdb_species": "s__Spirillospora sp004348535", "ani": 80.631, "matched_fragments": 1332, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008085905.1", "gtdb_species": "s__Spirillospora syzygii", "ani": 80.3348, "matched_fragments": 1468, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.88", "min_intra_species_ani": "95.88", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000518265.1", "gtdb_species": "s__Spirillospora oligospora", "ani": 80.2393, "matched_fragments": 1443, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009831215.1", "gtdb_species": "s__Spirillospora rayongensis", "ani": 79.9036, "matched_fragments": 1128, "total_fragments": 3542, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.301, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 37.5, "optimum_ph": 7.142, "genome_size": 8227448.539, "gc_content": 72.459, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.333, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinomadura", "rudentiformis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }