{ "type": "genome", "identifier": "GCF_008923365.1", "organism": "Actinomadura montaniterrae", "title": "Actinomadura montaniterrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008923365.1", "bioproject": "PRJNA224116", "biosample": "SAMN12856398", "wgs_master": "WBMR00000000.1", "refseq_category": "reference genome", "taxid": "1803903", "species_taxid": "1803903", "organism_name": "Actinomadura montaniterrae", "infraspecific_name": "strain=CYP1-1B", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/08", "asm_name": "ASM892336v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_008923365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/923/365/GCF_008923365.1_ASM892336v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10704999", "genome_size_ungapped": "10704849", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "506", "contig_count": "506", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008923365.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "10266", "protein_coding_gene_count": "9939", "non_coding_gene_count": "99", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-08", "dateModified": "2019-10-08", "datePublished": "2019-10-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura montaniterrae" ], "sample_taxid": [ "1803903" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Chaiyaphum Province" ], "sample_host_location_id": [], "data_size": "2.849 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10704999", "Number of Sequences": "506", "Longest Sequences (bp)": "282741", "N50 (bp)": "39374", "Gap Ratio (%)": "0.001401", "GCcontent (%)": "73.0", "Number of CDSs": "9751", "Average Protein Length": "311.8", "Coding Ratio (%)": "85.2", "Number of rRNAs": "6", "Number of tRNAs": "102", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3287, "total_fragments": 3310, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 93.2762, "matched_fragments": 2309, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 92.8901, "matched_fragments": 2543, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 92.2197, "matched_fragments": 2526, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura latina", "strain": "strain=ATCC BAA-277", "accession": "GCA_012396395.1", "taxid": 163603, "species_taxid": 163603, "relation_to_type": "type", "validated": true, "ani": 85.1094, "matched_fragments": 1731, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura darangshiensis", "strain": "strain=DSM 45941", "accession": "GCA_004349235.1", "taxid": 705336, "species_taxid": 705336, "relation_to_type": "type", "validated": true, "ani": 85.1043, "matched_fragments": 1892, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura geliboluensis", "strain": "strain=A8036", "accession": "GCA_005889745.1", "taxid": 882440, "species_taxid": 882440, "relation_to_type": "type", "validated": true, "ani": 85.0865, "matched_fragments": 1646, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 85.0456, "matched_fragments": 1665, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura latina", "strain": "strain=NBRC 106108", "accession": "GCA_001552195.1", "taxid": 163603, "species_taxid": 163603, "relation_to_type": "type", "validated": true, "ani": 85.019, "matched_fragments": 1750, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura citrea", "strain": "strain=DSM 43461", "accession": "GCA_013409045.1", "taxid": 46158, "species_taxid": 46158, "relation_to_type": "type", "validated": true, "ani": 84.736, "matched_fragments": 1950, "total_fragments": 3310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura 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3310, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017573545.1", "gtdb_species": "s__Spirillospora nitritigenes", "ani": 92.8852, "matched_fragments": 2545, "total_fragments": 3310, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.12", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013211575.1", "gtdb_species": "s__Spirillospora verrucosospora", "ani": 92.3251, "matched_fragments": 2533, "total_fragments": 3310, 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