{ "tc_result": [ { "organism_name": "Corynebacterium ciconiae", "strain": "strain=DSM 44920", "accession": "GCA_000372385.1", "taxid": 227319, "species_taxid": 227319, "relation_to_type": "type", "validated": true, "ani": 84.538, "matched_fragments": 689, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mastitidis", "strain": "strain=DSM 44356", "accession": "GCA_000375365.1", "taxid": 161890, "species_taxid": 161890, "relation_to_type": "type", "validated": true, "ani": 78.2586, "matched_fragments": 183, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.2019, "matched_fragments": 214, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium frankenforstense", "strain": "strain=ST18", "accession": "GCA_001941485.1", "taxid": 1230998, "species_taxid": 1230998, "relation_to_type": "type", "validated": true, "ani": 78.0715, "matched_fragments": 198, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=DSM 44683", "accession": "GCA_000688435.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.0596, "matched_fragments": 213, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=DSM 45392", "accession": "GCA_000819445.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 78.0521, "matched_fragments": 194, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.0085, "matched_fragments": 226, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium efficiens", "strain": "strain=YS-314", "accession": "GCA_000011305.1", "taxid": 152794, "species_taxid": 152794, "relation_to_type": "type", "validated": true, "ani": 77.9357, "matched_fragments": 176, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 77.9077, "matched_fragments": 194, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium occultum", "strain": "strain=2039", "accession": "GCA_009734425.1", "taxid": 2675219, "species_taxid": 2675219, "relation_to_type": "type", "validated": true, "ani": 77.8731, "matched_fragments": 183, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium afermentans subsp. lipophilum", "strain": "strain=CCUG 32105", "accession": "GCA_015351335.1", "taxid": 144184, "species_taxid": 38286, "relation_to_type": "type", "validated": true, "ani": 77.82, "matched_fragments": 153, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium efficiens", "strain": "strain=YS-314", "accession": "GCA_000160795.1", "taxid": 152794, "species_taxid": 152794, "relation_to_type": "type", "validated": true, "ani": 77.8072, "matched_fragments": 181, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 77.7972, "matched_fragments": 161, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lowii", "strain": "strain=NML 130206", "accession": "GCA_001412085.1", "taxid": 1544413, "species_taxid": 1544413, "relation_to_type": "type", "validated": true, "ani": 77.7124, "matched_fragments": 157, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 77.6311, "matched_fragments": 171, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium fournieri", "strain": "strain=Marseille-P2948", "accession": "GCA_900176865.1", "taxid": 1852390, "species_taxid": 1852390, "relation_to_type": "type", "validated": true, "ani": 77.5037, "matched_fragments": 160, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium sphenisci", "strain": "strain=DSM 44792", "accession": "GCA_001941505.1", "taxid": 191493, "species_taxid": 191493, "relation_to_type": "type", "validated": true, "ani": 77.3423, "matched_fragments": 182, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pilosum", "strain": "strain=CIP103422", "accession": "GCA_001044155.1", "taxid": 35756, "species_taxid": 35756, "relation_to_type": "type", "validated": true, "ani": 77.3318, "matched_fragments": 128, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pilosum", "strain": "strain=NCTC11862", "accession": "GCA_900447205.1", "taxid": 35756, "species_taxid": 35756, "relation_to_type": "type", "validated": true, "ani": 77.304, "matched_fragments": 129, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pilosum", "strain": "strain=DSM 20521", "accession": "GCA_000373805.1", "taxid": 35756, "species_taxid": 35756, "relation_to_type": "type", "validated": true, "ani": 77.2258, "matched_fragments": 126, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus ruber", "strain": "strain=NBRC 15591", "accession": "GCA_001894945.1", "taxid": 1830, "species_taxid": 1830, "relation_to_type": "type", "validated": true, "ani": 76.4654, "matched_fragments": 96, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008930665.1", "gtdb_species": "s__Corynebacterium sp008930665", "ani": 99.9959, "matched_fragments": 810, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.86", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 18, "status": "conclusive" }, { "accession": "GCF_000372385.1", "gtdb_species": "s__Corynebacterium ciconiae", "ani": 84.538, "matched_fragments": 689, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000375365.1", "gtdb_species": "s__Corynebacterium mastitidis", "ani": 78.2374, "matched_fragments": 184, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.64", "min_intra_species_ani": "96.64", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000341345.1", "gtdb_species": "s__Corynebacterium halotolerans", "ani": 78.2019, "matched_fragments": 214, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001941485.1", "gtdb_species": "s__Corynebacterium frankenforstense", "ani": 78.1078, "matched_fragments": 196, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000819445.1", "gtdb_species": "s__Corynebacterium humireducens", "ani": 78.0521, "matched_fragments": 194, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000550805.1", "gtdb_species": "s__Corynebacterium vitaeruminis", "ani": 78.0085, "matched_fragments": 226, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001807265.1", "gtdb_species": "s__Corynebacterium sp001807265", "ani": 77.9227, "matched_fragments": 155, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000011305.1", "gtdb_species": "s__Corynebacterium efficiens", "ani": 77.9166, "matched_fragments": 177, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009734425.1", "gtdb_species": "s__Corynebacterium sp009734425", "ani": 77.8731, "matched_fragments": 183, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002861385.1", "gtdb_species": "s__Corynebacterium aurimucosum_C", "ani": 77.8501, "matched_fragments": 163, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 28, "status": "-" }, { "accession": "GCF_015351335.1", "gtdb_species": "s__Corynebacterium lipophilum", "ani": 77.82, "matched_fragments": 153, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001412085.1", "gtdb_species": "s__Corynebacterium lowii", "ani": 77.7127, "matched_fragments": 157, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000835165.1", "gtdb_species": "s__Corynebacterium marinum", "ani": 77.6663, "matched_fragments": 184, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013978595.1", "gtdb_species": "s__Corynebacterium haemomassiliense", "ani": 77.6502, "matched_fragments": 170, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900176865.1", "gtdb_species": "s__Corynebacterium fournieri", "ani": 77.5233, "matched_fragments": 159, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012838985.1", "gtdb_species": "s__Corynebacterium sp012838985", "ani": 77.3389, "matched_fragments": 149, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001941505.1", "gtdb_species": "s__Corynebacterium sphenisci", "ani": 77.3262, "matched_fragments": 183, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000373805.1", "gtdb_species": "s__Corynebacterium pilosum", "ani": 77.2258, "matched_fragments": 126, "total_fragments": 811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" } ] }