{ "type": "genome", "identifier": "GCF_008931025.1", "organism": "Corynebacterium megadyptis subsp. megadyptis", "title": "Corynebacterium megadyptis subsp. megadyptis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northumbria University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008931025.1", "bioproject": "PRJNA224116", "biosample": "SAMN08442946", "wgs_master": "PQMV00000000.1", "refseq_category": "na", "taxid": "3027484", "species_taxid": "2080514", "organism_name": "Corynebacterium megadyptis subsp. megadyptis", "infraspecific_name": "strain=3B", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/09", "asm_name": "ASM893102v1", "asm_submitter": "Northumbria University", "gbrs_paired_asm": "GCA_008931025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/931/025/GCF_008931025.1_ASM893102v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2449513", "genome_size_ungapped": "2449513", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008931025.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "2185", "protein_coding_gene_count": "2110", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-09", "dateModified": "2019-10-09", "datePublished": "2019-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium megadyptis subsp. megadyptis" ], "sample_taxid": [ "3027484" ], "sample_host_organism": [ "Megadyptes antipodes" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], "sample_host_location_id": [], "data_size": "0.688 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2449513", "Number of Sequences": "16", "Longest Sequences (bp)": "531232", "N50 (bp)": "241725", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.9", "Number of CDSs": "2139", "Average Protein Length": "335.5", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium ciconiae", "strain": "strain=DSM 44920", "accession": "GCA_000372385.1", "taxid": 227319, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium marinum", "strain": "strain=CGMCC 1.6998", "accession": "GCA_014645275.1", "taxid": 349751, "species_taxid": 349751, "relation_to_type": "type", "validated": true, "ani": 77.7756, "matched_fragments": 190, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium maris", "strain": "strain=DSM 45190", "accession": "GCA_000442645.1", "taxid": 575200, "species_taxid": 575200, "relation_to_type": "type", "validated": true, "ani": 77.7603, "matched_fragments": 154, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium marinum", "strain": "strain=DSM 44953", "accession": "GCA_000835165.1", "taxid": 349751, "species_taxid": 349751, "relation_to_type": "type", "validated": true, "ani": 77.7372, "matched_fragments": 193, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lowii", "strain": "strain=NML 130206", "accession": "GCA_001412085.1", "taxid": 1544413, "species_taxid": 1544413, "relation_to_type": "type", "validated": true, "ani": 77.6784, "matched_fragments": 161, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium canis", "strain": "strain=CCUG 58627", "accession": "GCA_007859215.1", "taxid": 679663, "species_taxid": 679663, "relation_to_type": "type", "validated": true, "ani": 77.6264, "matched_fragments": 142, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium fournieri", "strain": "strain=Marseille-P2948", "accession": "GCA_900176865.1", "taxid": 1852390, "species_taxid": 1852390, "relation_to_type": "type", "validated": true, "ani": 77.5931, "matched_fragments": 160, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium oculi", 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