# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_16	LOCUS_00160	sequence1:15288..15545(-)	partial			WP_002658367.1	rhodanese-like domain-containing protein	92.9	64.2	87.3
MGA_123	LOCUS_01230	sequence1:121988..122239(-)	internal_stop_codon	122261..122263(-)		WP_010889691.1	30S ribosomal protein S1	100.0	15.1	96.4
MGA_124	LOCUS_01240	sequence1:122261..123643(-)	internal_stop_codon	122261..122263(-)		WP_010889691.1	30S ribosomal protein S1	100.0	83.5	94.3
MGA_141	LOCUS_01410	sequence1:144563..145198(-)	partial			WP_002656468.1	proline/glycine betaine ABC transporter permease	100.0	70.6	90.0
MGA_151	LOCUS_01510	sequence1:156901..157167(+)	partial			WP_010889695.1	hypothetical protein	100.0	61.1	83.0
MGA_260	LOCUS_02600	sequence1:279930..280271(-)	partial			WP_010889722.1	RNA chaperone Hfq	100.0	74.8	68.1
MGA_278	LOCUS_02780	sequence1:295050..295505(-)	partial			WP_002665266.1	flagellar protein	98.7	72.7	89.3
MGA_348	LOCUS_03480	sequence1:367054..367482(+)	partial			WP_174220839.1	hypothetical protein	70.4	73.5	52.0
MGA_457	LOCUS_04560	sequence1:492620..492784(-)	frameshift		492565,492622	WP_010889756.1	lipoprotein	98.1	41.1	52.8
MGA_500	LOCUS_04990	sequence1:532110..532295(+)	frameshift		532129,532538,532292	WP_002658001.1	inositol monophosphatase	86.9	18.7	83.0
MGA_501	LOCUS_05000	sequence1:532415..532552(+)	frameshift		532129,532292,532741,532806,532587,532790,532663,532538	WP_002658001.1	inositol monophosphatase	97.8	15.5	77.3
MGA_567	LOCUS_05660	sequence1:607732..607941(-)	frameshift,internal_stop_codon	607731..607733(-)	608057,607625	WP_010889773.1	ComEC/Rec2 family competence protein	100.0	16.6	79.7
MGA_568	LOCUS_05670	sequence1:608040..608381(-)	frameshift		608610,608054,608652,608430,608655	WP_010889773.1	ComEC/Rec2 family competence protein	98.2	26.7	76.6
MGA_591	LOCUS_05890	sequence1:639975..640127(+)	partial			WP_002658128.1	hypothetical protein	68.0	68.0	85.3
MGA_652	LOCUS_06500	sequence1:709909..710631(-)	partial			WP_002657405.1	hypothetical protein	97.1	67.0	85.0
MGA_722	LOCUS_07190	sequence1:788595..788777(-)	partial			WP_010889814.1	ABC transporter permease	100.0	18.4	98.3
MGA_733	LOCUS_07300	sequence1:798825..799037(+)	frameshift		799031	WP_002665764.1	hypothetical protein	98.6	31.5	82.6
MGA_734	LOCUS_07310	sequence1:799021..799425(+)	frameshift		799413,799031	WP_002665764.1	hypothetical protein	97.0	59.4	81.5
MGA_768	LOCUS_07650	sequence1:828002..828307(-)	partial			WP_010889820.1	hypothetical protein	100.0	48.8	83.2
MGA_774	LOCUS_07710	sequence1:839730..840269(+)	frameshift		839715,839782	WP_002656609.1	ComF family protein	89.9	78.5	88.2
MGA_864	LOCUS_08600	sequence3:26501..>27105(-)	partial			WP_010890590.1	PTS cellobiose transporter subunit IIC	100.0	45.5	89.0
MGA_866	LOCUS_08620	sequence4:905..1102(-)	frameshift,internal_stop_codon	877..879(-),889..891(-),1139..1141(-),913..915(-)	916,1175	WP_010890337.1	adenine deaminase	93.8	10.9	63.9
MGA_873	LOCUS_08690	sequence4:8234..8500(-)	frameshift		8483,8452,8661,8281,8507,8510	WP_010890314.1	class I SAM-dependent DNA methyltransferase	83.0	5.9	63.6
MGA_880	LOCUS_08760	sequence4:17189..17404(+)	frameshift,internal_stop_codon	17569..17571(+),17662..17664(+)	17616,17549,17486,17679	WP_010258956.1	ParA family protein	91.5	25.8	70.8
MGA_885	LOCUS_08810	sequence4:24089..24268(-)	frameshift		24300	WP_010890324.1	complement regulator-acquiring protein	100.0	21.2	83.1
MGA_886	LOCUS_08820	sequence4:24289..24609(-)	frameshift		24880,24778,24298	WP_010890326.1	complement regulator-acquiring protein	100.0	38.5	69.2
MGA_887	LOCUS_08830	sequence4:25132..25650(-)	frameshift,internal_stop_codon	25675..25677(-)	24880	WP_010890324.1	complement regulator-acquiring protein	100.0	62.2	74.0
MGA_888	LOCUS_08840	sequence4:25675..25965(-)	internal_stop_codon	25675..25677(-)		WP_010890324.1	complement regulator-acquiring protein	100.0	34.5	62.5
MGA_893	LOCUS_08890	sequence4:30395..30574(-)	frameshift		30603,30814	WP_010890324.1	complement regulator-acquiring protein	100.0	21.2	83.1
MGA_894	LOCUS_08900	sequence4:30595..30825(-)	frameshift,internal_stop_codon	31028..31030(-),31007..31009(-)	30603,30814	WP_010890324.1	complement regulator-acquiring protein	97.4	26.6	66.2
MGA_895	LOCUS_08910	sequence4:32155..32418(-)	internal_stop_codon	32155..32157(-)		WP_010890266.1	ErpD protein	90.8	22.9	58.2
MGA_897	LOCUS_08930	sequence4:32762..32926(-)	frameshift		32764	WP_010890266.1	ErpD protein	98.1	15.4	62.3
MGA_898	LOCUS_08940	sequence4:33653..33964(-)	frameshift,internal_stop_codon	34074..34076(-)	34049,33935	WP_010890608.1	plasmid maintenance protein	62.1	18.2	52.2
MGA_899	LOCUS_08950	sequence4:34378..34551(+)	frameshift		34545,34548	WP_010883947.1	P52 family lipoprotein	100.0	40.6	67.2
MGA_900	LOCUS_08960	sequence4:34553..34819(+)	frameshift		34545,34548	WP_010883947.1	P52 family lipoprotein	90.9	50.3	62.5
MGA_902	LOCUS_08980	sequence5:3188..3490(-)	internal_stop_codon	3188..3190(-)		WP_010890291.1	Bdr family repetitive protein	94.0	42.1	65.2
MGA_903	LOCUS_08990	sequence5:3711..3923(-)	frameshift,internal_stop_codon	3982..3984(-),4190..4192(-),4012..4014(-),3711..3713(-)	3945,4114	WP_010890290.1	DnaB helicase C-terminal domain-containing protein	100.0	25.8	70.4
MGA_904	LOCUS_09000	sequence5:4330..4638(-)	frameshift		4352,4328,4685	WP_010890289.1	DUF226 domain-containing protein	93.1	55.6	88.4
MGA_905	LOCUS_09010	sequence5:7109..7348(-)	frameshift,internal_stop_codon	6932..6934(-)	7056,6992,7117	WP_010890312.1	chromosome replication/partitioning protein	84.8	33.5	67.1
MGA_907	LOCUS_09030	sequence5:8947..9273(-)	frameshift,internal_stop_codon	9419..9421(-),9346..9348(-)	9006,9391	WP_010890275.1	chromosome replication/partitioning protein	83.3	49.2	76.7
MGA_908	LOCUS_09040	sequence5:10734..11153(-)	partial			WP_010890312.1	chromosome replication/partitioning protein	89.2	61.2	60.2
MGA_909	LOCUS_09050	sequence5:11850..12518(-)	internal_stop_codon	12571..12573(-),12490..12492(-),12583..12585(-)		WP_010890325.1	virulence associated lipoprotein	93.2	45.2	57.7
MGA_911	LOCUS_09070	sequence5:14311..14571(+)	internal_stop_codon	14569..14571(+)		WP_010890331.1	lipoprotein P35	100.0	28.5	58.2
MGA_912	LOCUS_09080	sequence5:14656..14925(+)	frameshift,internal_stop_codon	14569..14571(+)	15076,14871,15079,14953,14941	WP_010890331.1	lipoprotein P35	98.9	33.5	71.6
MGA_913	LOCUS_09090	sequence5:16433..16807(+)	internal_stop_codon	16805..16807(+),16391..16393(+)		WP_014023153.1	P13 family porin	100.0	77.8	59.2
MGA_919	LOCUS_09150	sequence5:23391..24305(+)	frameshift,internal_stop_codon	23189..23191(+)	23408,23209,23140,23357	WP_010890322.1	MFS transporter	95.1	73.7	77.9
MGA_921	LOCUS_09170	sequence5:26032..26202(-)	frameshift,internal_stop_codon	26032..26034(-),25990..25992(-),25827..25829(-)	25747,25766,25887	WP_010890325.1	virulence associated lipoprotein	82.1	10.2	84.8
MGA_924	LOCUS_09200	sequence5:30190..31110(-)	partial			WP_010890325.1	virulence associated lipoprotein	67.3	45.5	85.0
MGA_929	LOCUS_09250	sequence5:37752..38186(+)	internal_stop_codon	38184..38186(+)		WP_010890289.1	DUF226 domain-containing protein	82.6	70.8	49.6
MGA_930	LOCUS_09260	sequence5:38440..38583(+)	frameshift,internal_stop_codon	38431..38433(+),38581..38583(+)	38420	WP_010883916.1	Bdr family repetitive protein	100.0	20.3	85.1
MGA_931	LOCUS_09270	sequence5:39033..39539(-)	frameshift,internal_stop_codon	39031..39033(-)	38961,39427,39445,38988,39631	WP_010890304.1	hypothetical protein	100.0	66.1	67.9
MGA_934	LOCUS_09290	sequence6:1314..1712(+)	internal_stop_codon	1710..1712(+)		WP_014017549.1	DUF603 domain-containing protein	100.0	70.2	62.9
MGA_935	LOCUS_09300	sequence6:1740..1880(+)	internal_stop_codon	1710..1712(+)		WP_010883788.1	DUF603 domain-containing protein	73.9	18.1	76.5
MGA_936	LOCUS_09310	sequence6:2463..3005(+)	frameshift		2394,2467	WP_010883725.1	PBSX family phage terminase large subunit	98.3	39.3	83.6
MGA_937	LOCUS_09320	sequence6:3105..3401(+)	frameshift,internal_stop_codon	3399..3401(+)	3091,3596	WP_010257444.1	DUF1073 domain-containing protein	96.9	23.3	78.9
MGA_938	LOCUS_09330	sequence6:3408..3632(+)	frameshift,internal_stop_codon	3399..3401(+)	3596	WP_010883889.1	DUF1073 domain-containing protein	90.5	16.4	73.1
MGA_939	LOCUS_09340	sequence6:3568..3972(+)	frameshift,internal_stop_codon	3399..3401(+)	3599	WP_010883851.1	DUF1073 domain-containing protein	85.1	28.0	80.7
MGA_940	LOCUS_09350	sequence6:4453..4863(+)	frameshift		4849,4500,4479	WP_010883748.1	DUF777 family protein	99.3	77.3	78.6
MGA_941	LOCUS_09360	sequence6:5098..5310(+)	internal_stop_codon	5083..5085(+)		WP_010883840.1	DUF2634 domain-containing protein	97.1	71.8	60.8
MGA_942	LOCUS_09370	sequence6:5307..5510(+)	frameshift		5760,5697,5649,5555,5498,5742	WP_010883800.1	DUF276 domain-containing protein	100.0	23.0	89.6
MGA_943	LOCUS_09380	sequence6:5520..5663(+)	frameshift		5760,5697,5649,5555,5800,5498,5742	WP_010883777.1	DUF276 domain-containing protein	72.3	11.7	70.6
MGA_944	LOCUS_09390	sequence6:6289..6489(+)	frameshift		6466,6156,6303	WP_010883842.1	DUF735 family protein	89.4	29.4	81.4
MGA_945	LOCUS_09400	sequence6:6752..6904(+)	frameshift,internal_stop_codon	7094..7096(+)	6955,6883	WP_010883778.1	DUF685 domain-containing protein	82.0	15.1	63.4
MGA_946	LOCUS_09410	sequence6:7292..7513(+)	frameshift,internal_stop_codon	7512..7514(+),7092..7094(+)	7244,7526	WP_010883915.1	DUF685 domain-containing protein	100.0	27.3	43.2
MGA_948	LOCUS_09430	sequence6:7814..8074(+)	frameshift		8089,8062	WP_010883728.1	BlyB family putative holin accessory protein	94.2	67.8	69.1
MGA_949	LOCUS_09440	sequence6:8161..8337(+)	frameshift		8310	WP_010883844.1	BlyB family putative holin accessory protein	89.7	46.8	86.5
MGA_950	LOCUS_09450	sequence6:8334..8498(+)	frameshift		8310	WP_002658486.1	BlyB family putative holin accessory protein	98.1	47.7	86.8
MGA_954	LOCUS_09490	sequence6:11191..11355(-)	frameshift,internal_stop_codon	11387..11389(-),11189..11191(-),11078..11080(-)	10993,11482,11125,11557	WP_010890603.1	ERF family protein	94.4	16.9	84.3
MGA_955	LOCUS_09500	sequence6:11495..11725(-)	frameshift,internal_stop_codon	11387..11389(-)	11557,11479	WP_010883754.1	ERF family protein	77.6	18.8	78.0
MGA_960	LOCUS_09550	sequence6:15279..15614(+)	partial			WP_010258659.1	Bdr family repetitive protein	62.2	34.2	69.7
MGA_961	LOCUS_09560	sequence6:16119..16241(-)	partial			WP_010883924.1	tyrosine-type recombinase/integrase	97.5	15.1	59.0
MGA_964	LOCUS_09570	sequence7:702..1487(-)	frameshift		1540	WP_075552700.1	variable large family protein	68.6	59.0	33.2
MGA_965	LOCUS_09580	sequence7:1532..2380(-)	frameshift		1540	WP_075552700.1	variable large family protein	99.3	77.7	43.8
MGA_966	LOCUS_09590	sequence7:2815..3534(+)	frameshift		3465,3468	WP_075552700.1	variable large family protein	88.7	60.1	45.4
MGA_967	LOCUS_09600	sequence7:3699..4136(+)	frameshift		4058,3468	WP_075552700.1	variable large family protein	63.4	28.2	34.0
MGA_968	LOCUS_09610	sequence7:4304..4993(+)	partial			WP_075552700.1	variable large family protein	91.3	63.3	36.8
MGA_981	LOCUS_09740	sequence8:5570..5800(+)	frameshift		5779,5868,5837	WP_010890377.1	DUF2634 domain-containing protein	92.1	63.1	90.0
MGA_982	LOCUS_09750	sequence8:5894..6061(+)	frameshift,internal_stop_codon	6053..6055(+)	6040,6274,6199,6079	WP_010258108.1	DUF276 domain-containing protein	87.3	16.6	97.9
MGA_983	LOCUS_09760	sequence8:6538..6801(+)	frameshift,internal_stop_codon	6692..6694(+)	6274,6643,6421,6424,6397	WP_010258108.1	DUF276 domain-containing protein	46.0	13.8	77.5
MGA_984	LOCUS_09770	sequence8:6758..7183(+)	frameshift		7216,7351,7165,7183	WP_010258110.1	DUF735 family protein	97.2	65.9	86.9
MGA_985	LOCUS_09780	sequence8:7445..7798(+)	frameshift		7750	WP_010258113.1	DUF685 domain-containing protein	100.0	34.0	78.6
MGA_986	LOCUS_09790	sequence8:7816..8484(+)	frameshift		7750	WP_010258113.1	DUF685 domain-containing protein	99.5	63.7	80.1
MGA_987	LOCUS_09800	sequence8:8507..8686(+)	partial			WP_010258115.1	BlyA family holin	66.1	66.1	82.1
MGA_988	LOCUS_09810	sequence8:8683..8985(+)	internal_stop_codon	8983..8985(+)		WP_010258117.1	BlyB family putative holin accessory protein	100.0	70.9	86.0
MGA_996	LOCUS_09890	sequence8:15808..16041(+)	frameshift		16026	WP_010259081.1	DUF261 domain-containing protein	96.1	51.7	91.9
MGA_997	LOCUS_09900	sequence8:16067..16240(+)	frameshift		16026	WP_010259081.1	DUF261 domain-containing protein	100.0	39.9	80.7
MGA_1002	LOCUS_09950	sequence8:18858..19100(+)	frameshift,internal_stop_codon	19047..19049(+)	19046,18703	WP_010890382.1	helix-turn-helix domain-containing protein	100.0	39.6	71.2
MGA_1003	LOCUS_09960	sequence8:19235..19459(+)	frameshift		19603,19429	WP_010258365.1	PBSX family phage terminase large subunit	100.0	16.9	71.1
MGA_1004	LOCUS_09970	sequence8:19587..20000(+)	frameshift,internal_stop_codon	20045..20047(+),20000..20002(+)	19603,19429,20071	WP_010258365.1	PBSX family phage terminase large subunit	96.4	29.3	93.9
MGA_1005	LOCUS_09980	sequence8:20192..20449(+)	frameshift,internal_stop_codon	20043..20045(+),19998..20000(+)	20435,20069	WP_010258365.1	PBSX family phage terminase large subunit	94.1	17.8	93.8
MGA_1012	LOCUS_10050	sequence8:26274..26690(+)	internal_stop_codon	26688..26690(+),26802..26804(+)		WP_010890387.1	DUF1073 domain-containing protein	93.5	31.6	79.8
MGA_1013	LOCUS_10060	sequence8:26808..27002(+)	frameshift,internal_stop_codon	26688..26690(+),27000..27002(+),26802..26804(+)	27167	WP_010890387.1	DUF1073 domain-containing protein	100.0	15.7	93.8
MGA_1014	LOCUS_10070	sequence8:27355..27498(+)	frameshift,internal_stop_codon	27496..27498(+)	27167	WP_010890387.1	DUF1073 domain-containing protein	100.0	11.5	91.5
MGA_1016	LOCUS_10090	sequence8:28192..28518(+)	frameshift,internal_stop_codon	28659..28661(+)	28458,28531	WP_010257711.1	DUF228 domain-containing protein	84.3	45.0	90.1
MGA_1017	LOCUS_10100	sequence8:28668..28802(+)	frameshift,internal_stop_codon	28659..28661(+)	28458,28531	WP_010257711.1	DUF228 domain-containing protein	100.0	21.8	81.8
MGA_1018	LOCUS_10110	sequence8:28819..29151(+)	frameshift,internal_stop_codon	29128..29130(+),29185..29187(+)	29094	WP_010257713.1	hypothetical protein	83.6	30.2	95.7
MGA_1019	LOCUS_10120	sequence8:29193..29555(+)	frameshift,internal_stop_codon	29128..29130(+),29185..29187(+)	29094,29535	WP_010257713.1	hypothetical protein	95.8	37.7	87.0
MGA_1020	LOCUS_10130	sequence8:29741..30037(+)	frameshift		30155,30007	WP_010257716.1	DUF3890 domain-containing protein	100.0	64.7	65.3
MGA_1023	LOCUS_10160	sequence8:31228..31437(+)	frameshift		31185,31420,30975	WP_010257727.1	DUF764 family protein	92.8	35.8	89.1
MGA_1024	LOCUS_10170	sequence8:31622..31765(+)	frameshift		31583	WP_010890388.1	DUF787 family protein	100.0	13.2	76.6
MGA_1025	LOCUS_10180	sequence8:31728..31970(+)	frameshift		31583	WP_010890388.1	DUF787 family protein	83.8	18.3	80.6
MGA_1026	LOCUS_10190	sequence8:31960..32160(+)	frameshift		32136,32091	WP_010257732.1	DUF1473 family protein	66.7	27.2	90.9
MGA_1031	LOCUS_10240	sequence8:33796..33924(+)	internal_stop_codon	33922..33924(+)		WP_010890389.1	DUF792 family protein	100.0	22.5	90.5
MGA_1032	LOCUS_10250	sequence8:34216..34359(+)	internal_stop_codon	33922..33924(+)		WP_010890389.1	DUF792 family protein	100.0	25.1	91.5
MGA_1036	LOCUS_10290	sequence8:36055..36306(+)	frameshift		36288	WP_010257820.1	DUF693 family protein	91.6	24.9	41.8
MGA_1038	LOCUS_10310	sequence8:36696..36986(+)	internal_stop_codon	36609..36611(+)		WP_010883747.1	DUF693 family protein	77.1	24.1	42.1
MGA_1041	LOCUS_10340	sequence8:39284..39502(-)	partial			WP_010890394.1	hypothetical protein	68.1	62.0	69.4
