{ "type": "genome", "identifier": "GCF_008932115.1", "organism": "Bradyrhizobium betae", "title": "Bradyrhizobium betae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Agriculture and Agri-Food Canada", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008932115.1", "bioproject": "PRJNA224116", "biosample": "SAMN12900461", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "244734", "species_taxid": "244734", "organism_name": "Bradyrhizobium betae", "infraspecific_name": "strain=PL7HG1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/09", "asm_name": "ASM893211v1", "asm_submitter": "Agriculture and Agri-Food Canada", "gbrs_paired_asm": "GCA_008932115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/932/115/GCF_008932115.1_ASM893211v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7419402", "genome_size_ungapped": "7419402", "gc_percent": "64.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008932115.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "7142", "protein_coding_gene_count": "6904", "non_coding_gene_count": "54", "pubmed_id": "31727720" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-09", "dateModified": "2019-10-09", "datePublished": "2019-10-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium betae" ], "sample_taxid": [ "244734" ], "sample_host_organism": [ "Beta vulgaris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Salamanca" ], "sample_host_location_id": [], "data_size": "2.043 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7419402", "Number of Sequences": "2", "Longest Sequences (bp)": "7150095", "N50 (bp)": "7150095", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "7176", "Average Protein Length": "301.3", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium betae", "strain": "strain=PL7HG1", "accession": "GCA_008932115.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2467, "total_fragments": 2472, 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"strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 89.5226, "matched_fragments": 1778, "total_fragments": 2472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium symbiodeficiens", "strain": "strain=85S1MB", "accession": "GCA_002266465.2", "taxid": 1404367, "species_taxid": 1404367, "relation_to_type": "type", "validated": true, "ani": 89.0369, "matched_fragments": 1794, "total_fragments": 2472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium amphicarpaeae", "strain": "strain=39S1MB", "accession": "GCA_002266435.2", "taxid": 1404768, "species_taxid": 1404768, "relation_to_type": "type", "validated": true, "ani": 88.9371, "matched_fragments": 1825, "total_fragments": 2472, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": 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