{
    "type": "genome",
    "identifier": "GCF_008933175.2",
    "organism": "Clostridium estertheticum subsp. laramiense",
    "title": "Clostridium estertheticum subsp. laramiense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "AgResearch",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008933175.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12859418",
        "wgs_master": "WBOE00000000.2",
        "refseq_category": "na",
        "taxid": "205326",
        "species_taxid": "238834",
        "organism_name": "Clostridium estertheticum subsp. laramiense",
        "infraspecific_name": "strain=DSM 14864",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/25",
        "asm_name": "ASM893317v2",
        "asm_submitter": "AgResearch",
        "gbrs_paired_asm": "GCA_008933175.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/933/175/GCF_008933175.2_ASM893317v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5074190",
        "genome_size_ungapped": "5074190",
        "gc_percent": "31.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008933175.2-RS_2024_11_06",
        "annotation_date": "2024-11-06",
        "total_gene_count": "4922",
        "protein_coding_gene_count": "4718",
        "non_coding_gene_count": "132",
        "pubmed_id": "33397617"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-25",
    "dateModified": "2021-09-25",
    "datePublished": "2021-09-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium estertheticum subsp. laramiense"
        ],
        "sample_taxid": [
            "205326"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.385 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5074190",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "4750420",
        "N50 (bp)": "4750420",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.8",
        "Number of CDSs": "4796",
        "Average Protein Length": "294.6",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "50",
        "Number of tRNAs": "77",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Clostridium estertheticum subsp. laramiense",
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                "accession": "GCA_008933175.2",
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                "validated": true,
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            },
            {
                "organism_name": "Clostridium estertheticum subsp. estertheticum",
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                "species_taxid": 238834,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1690,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Clostridium frigoris",
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                "relation_to_type": "type",
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                "ani": 89.3485,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium algoriphilum",
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                "accession": "GCA_020443705.1",
                "taxid": 198347,
                "species_taxid": 198347,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7975,
                "matched_fragments": 814,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium psychrophilum",
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                "taxid": 132926,
                "species_taxid": 132926,
                "relation_to_type": "type",
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                "matched_fragments": 781,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium lacusfryxellense",
                "strain": "strain=DSM 14205",
                "accession": "GCA_018861735.1",
                "taxid": 205328,
                "species_taxid": 205328,
                "relation_to_type": "type",
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                "ani": 81.7952,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium tagluense",
                "strain": "strain=A121",
                "accession": "GCA_003865095.1",
                "taxid": 360422,
                "species_taxid": 360422,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3376,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium felsineum",
                "strain": "strain=DSM 7320",
                "accession": "GCA_002006215.2",
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                "species_taxid": 36839,
                "relation_to_type": "type",
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                "matched_fragments": 163,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium felsineum",
                "strain": "strain=DSM 793",
                "accession": "GCA_002006235.2",
                "taxid": 36839,
                "species_taxid": 36839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6384,
                "matched_fragments": 166,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium felsineum",
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                "accession": "GCA_002006355.2",
                "taxid": 36839,
                "species_taxid": 36839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5195,
                "matched_fragments": 160,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium hydrogenum",
                "strain": "strain=CUEA01",
                "accession": "GCA_021432385.1",
                "taxid": 2855764,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 192,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium faecium",
                "strain": "strain=N37",
                "accession": "GCA_014836835.1",
                "taxid": 2762223,
                "species_taxid": 2762223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1773,
                "matched_fragments": 168,
                "total_fragments": 1690,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_001877035.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AD",
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            {
                "accession": "GCF_018861325.1",
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            },
            {
                "accession": "GCF_018861905.1",
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                "matched_fragments": 1247,
                "total_fragments": 1690,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002403785.1",
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                "mean_intra_species_ani": "N/A",
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            },
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            },
            {
                "accession": "GCF_018861735.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "rRNA16S_genes": 16.0,
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        "mesophilic_range_tmp": 0.944,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "estertheticum",
        "subsp.",
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}