{ "type": "genome", "identifier": "GCF_008974245.1", "organism": "Streptomyces abyssomicinicus", "title": "Streptomyces abyssomicinicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008974245.1", "bioproject": "PRJNA224116", "biosample": "SAMD00035864", "wgs_master": "BBZI00000000.1", "refseq_category": "reference genome", "taxid": "574929", "species_taxid": "574929", "organism_name": "Streptomyces abyssomicinicus", "infraspecific_name": "strain=CHI39", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/05", "asm_name": "ASM897424v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_008974245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/974/245/GCF_008974245.1_ASM897424v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7929138", "genome_size_ungapped": "7917405", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008974245.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "6768", "protein_coding_gene_count": "6547", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-05", "dateModified": "2019-10-05", "datePublished": "2019-10-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces abyssomicinicus" ], "sample_taxid": [ "574929" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.095 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7929138", "Number of Sequences": "24", "Longest Sequences (bp)": "1876413", "N50 (bp)": "851274", "Gap Ratio (%)": "0.147973", "GCcontent (%)": "73.1", "Number of CDSs": "6833", "Average Protein Length": "336.2", "Coding Ratio (%)": "86.9", "Number of rRNAs": "2", "Number of tRNAs": "88", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces abyssomicinicus", "strain": "strain=CHI39", "accession": "GCA_008974245.1", "taxid": 574929, "species_taxid": 574929, 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"below_threshold" }, { "organism_name": "Streptomyces parvulus", "strain": "strain=JCM 4068", "accession": "GCA_014648855.1", "taxid": 146923, "species_taxid": 146923, "relation_to_type": "type", "validated": true, "ani": 82.1925, "matched_fragments": 1381, "total_fragments": 2631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces galbus", "strain": "strain=DSM 40089", "accession": "GCA_005280195.1", "taxid": 33898, "species_taxid": 33898, "relation_to_type": "type", "validated": true, "ani": 82.1888, "matched_fragments": 1413, "total_fragments": 2631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces galbus", "strain": "strain=JCM 4639", "accession": "GCA_014650535.1", "taxid": 33898, "species_taxid": 33898, "relation_to_type": "type", "validated": true, "ani": 82.1701, "matched_fragments": 1414, "total_fragments": 2631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces 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