{ "type": "genome", "identifier": "GCF_008974325.1", "organism": "Patiriisocius marinus", "title": "Patiriisocius marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bioproduction Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008974325.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166797", "wgs_master": "BKCG00000000.1", "refseq_category": "reference genome", "taxid": "1397112", "species_taxid": "1397112", "organism_name": "Patiriisocius marinus", "infraspecific_name": "strain=KCTC 32322T", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/10", "asm_name": "ASM897432v1", "asm_submitter": "Bioproduction Research Institute", "gbrs_paired_asm": "GCA_008974325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/974/325/GCF_008974325.1_ASM897432v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3558331", "genome_size_ungapped": "3558331", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008974325.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "3228", "protein_coding_gene_count": "3169", "non_coding_gene_count": "39", "pubmed_id": "32539909" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-10", "dateModified": "2019-10-10", "datePublished": "2019-10-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Patiriisocius marinus" ], "sample_taxid": [ "1397112" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.993 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3558331", "Number of Sequences": "28", "Longest Sequences (bp)": "1143345", "N50 (bp)": "343998", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.3", "Number of CDSs": "3170", "Average Protein Length": "334.0", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Patiriisocius marinus", "strain": "strain=NBRC 109484", "accession": "GCA_008974325.1", "taxid": 1397112, "species_taxid": 1397112, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1166, 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"below_threshold" }, { "organism_name": "Ulvibacter antarcticus", "strain": "strain=DSM 23424", "accession": "GCA_003688405.1", "taxid": 442714, "species_taxid": 442714, "relation_to_type": "type", "validated": true, "ani": 77.3868, "matched_fragments": 144, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 77.093, "matched_fragments": 74, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 77.0059, "matched_fragments": 142, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochleicola 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"accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.9352, "matched_fragments": 124, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.8082, "matched_fragments": 122, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella undariae", "strain": "strain=CCUG 63832", "accession": "GCA_013285155.1", "taxid": 1285465, "species_taxid": 1285465, "relation_to_type": "type", "validated": true, "ani": 76.7722, "matched_fragments": 173, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905182755.1", "gtdb_species": "s__Patiriisocius sp905182755", "ani": 78.173, "matched_fragments": 143, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.66", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_009014635.1", "gtdb_species": "s__Patiriisocius marinistellae", "ani": 77.9484, "matched_fragments": 380, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003450155.1", "gtdb_species": "s__Patiriisocius sp003450155", "ani": 77.881, "matched_fragments": 146, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018656255.1", "gtdb_species": "s__Patiriisocius sp018656255", "ani": 77.6735, "matched_fragments": 109, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "97.76", 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