{ "type": "genome", "identifier": "GCF_009014635.1", "organism": "Patiriisocius marinistellae", "title": "Patiriisocius marinistellae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bioproduction Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009014635.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166796", "wgs_master": "BKCF00000000.1", "refseq_category": "reference genome", "taxid": "2494560", "species_taxid": "2494560", "organism_name": "Patiriisocius marinistellae", "infraspecific_name": "strain=KK4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/24", "asm_name": "ASM901463v1", "asm_submitter": "Bioproduction Research Institute", "gbrs_paired_asm": "GCA_009014635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/014/635/GCF_009014635.1_ASM901463v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3341869", "genome_size_ungapped": "3341869", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009014635.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "3021", "protein_coding_gene_count": "2966", "non_coding_gene_count": "42", "pubmed_id": "32539909" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-24", "dateModified": "2019-09-24", "datePublished": "2019-09-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Patiriisocius marinistellae" ], "sample_taxid": [ "2494560" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Hokkaido, Sapporo" ], "sample_host_location_id": [], "data_size": "0.933 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3341869", "Number of Sequences": "30", "Longest Sequences (bp)": "1478771", "N50 (bp)": "441699", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.4", "Number of CDSs": "2972", "Average Protein Length": "334.0", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Patiriisocius marinistellae", "strain": "strain=KK4", "accession": "GCA_009014635.1", "taxid": 2494560, "species_taxid": 2494560, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=DSM 16195", "accession": "GCA_900102055.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 77.2556, "matched_fragments": 210, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.2142, "matched_fragments": 103, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 77.0673, "matched_fragments": 121, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas ophiurae", "strain": "strain=KMM 3046", "accession": "GCA_003413745.1", "taxid": 387659, "species_taxid": 387659, "relation_to_type": "type", "validated": true, "ani": 77.0294, "matched_fragments": 155, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.0281, "matched_fragments": 125, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.0079, "matched_fragments": 126, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.9306, "matched_fragments": 98, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa haliotis", "strain": "strain=LMG 28520", "accession": "GCA_001685485.1", "taxid": 1555194, "species_taxid": 1555194, "relation_to_type": "type", "validated": true, "ani": 76.9029, "matched_fragments": 110, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochleicola gelatinilyticus", "strain": "strain=LPB0005", "accession": "GCA_001637325.1", "taxid": 1763537, "species_taxid": 1763537, "relation_to_type": "type", "validated": true, "ani": 76.8979, "matched_fragments": 197, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella thalassocola", "strain": "strain=DSM 15363", "accession": "GCA_900099995.1", 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"GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.7315, "matched_fragments": 64, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 76.7234, "matched_fragments": 117, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita iocasae", "strain": "strain=KX20305", "accession": "GCA_016757735.1", "taxid": 2803865, "species_taxid": 2803865, "relation_to_type": "type", "validated": true, "ani": 76.7213, "matched_fragments": 108, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana marina", "strain": "strain=JLT21", "accession": "GCA_011762485.1", "taxid": 1565536, "species_taxid": 1565536, 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"status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=JCM30924", "accession": "GCA_003426875.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 75.7902, "matched_fragments": 87, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009014635.1", "gtdb_species": "s__Patiriisocius marinistellae", "ani": 100.0, "matched_fragments": 1099, "total_fragments": 1100, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_008974325.1", "gtdb_species": 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