{ "type": "genome", "identifier": "GCF_009035845.1", "organism": "Acinetobacter baumannii", "title": "Acinetobacter baumannii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Technology Sydney", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009035845.1", "bioproject": "PRJNA224116", "biosample": "SAMN12389466", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "470", "species_taxid": "470", "organism_name": "Acinetobacter baumannii", "infraspecific_name": "strain=ATCC 19606", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/16", "asm_name": "ASM903584v1", "asm_submitter": "University of Technology Sydney", "gbrs_paired_asm": "GCA_009035845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/035/845/GCF_009035845.1_ASM903584v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3999136", "genome_size_ungapped": "3999136", "gc_percent": "39.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009035845.1-RS_2024_03_30", "annotation_date": "2024-03-30", "total_gene_count": "3832", "protein_coding_gene_count": "3686", "non_coding_gene_count": "96", "pubmed_id": "33255319" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-16", "dateModified": "2019-10-16", "datePublished": "2019-10-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter baumannii" ], "sample_taxid": [ "470" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "UTI" ], "sample_host_disease_id": [], "sample_host_location": [ "USA:Georgia, Atlanta" ], "sample_host_location_id": [], "data_size": "1.130 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3999136", "Number of Sequences": "3", "Longest Sequences (bp)": "3981941", "N50 (bp)": "3981941", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.1", "Number of CDSs": "3719", "Average Protein Length": "313.2", "Coding Ratio (%)": "87.4", "Number of rRNAs": "18", "Number of tRNAs": "73", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_009035845.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1328, "total_fragments": 1332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 99.9971, "matched_fragments": 1320, "total_fragments": 1332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 99.9925, "matched_fragments": 1325, "total_fragments": 1332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_014116795.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 99.9814, "matched_fragments": 1294, "total_fragments": 1332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_000737145.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 99.9716, "matched_fragments": 1317, "total_fragments": 1332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 89.1985, "matched_fragments": 1049, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 80.4249, "matched_fragments": 481, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 78.8245, "matched_fragments": 287, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009759685.1", "gtdb_species": "s__Acinetobacter baumannii", "ani": 99.9947, "matched_fragments": 1325, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "96.67", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 5417, "status": "conclusive" }, { "accession": "GCF_000368085.1", "gtdb_species": "s__Acinetobacter nosocomialis", "ani": 92.0747, "matched_fragments": 1098, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "97.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 250, "status": "-" }, { "accession": "GCF_000368065.1", "gtdb_species": "s__Acinetobacter seifertii", "ani": 90.2385, "matched_fragments": 1068, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.88", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.81", "num_clustered_genomes": 81, "status": "-" }, { "accession": "GCF_002928115.1", "gtdb_species": "s__Acinetobacter pittii_H", "ani": 89.3237, "matched_fragments": 1079, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.46", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_001605885.1", "gtdb_species": "s__Acinetobacter lactucae", "ani": 88.6119, "matched_fragments": 1056, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_013344765.1", "gtdb_species": "s__Acinetobacter lactucae_A", "ani": 88.5782, "matched_fragments": 869, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.14", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000399685.1", "gtdb_species": "s__Acinetobacter pittii_E", "ani": 88.5557, "matched_fragments": 1053, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000196795.1", "gtdb_species": "s__Acinetobacter oleivorans", "ani": 88.201, "matched_fragments": 1099, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.22", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 40, "status": "-" }, { "accession": "GCF_000313935.1", "gtdb_species": "s__Acinetobacter sp000313935", "ani": 88.175, "matched_fragments": 1037, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "99.37", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000399665.1", "gtdb_species": "s__Acinetobacter calcoaceticus_B", "ani": 87.715, "matched_fragments": 1049, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016508255.1", "gtdb_species": "s__Acinetobacter calcoaceticus_E", "ani": 87.3552, "matched_fragments": 1016, "total_fragments": 1332, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.137, "growth_tmp": 34.667, "optimum_tmp": 36.111, "optimum_ph": 7.1, "genome_size": 4004923.676, "gc_content": 38.643, "coding_genes": 3717.58, "rRNA16S_genes": 5.632, "tRNA_genes": 72.393, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "baumannii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }