{ "type": "genome", "identifier": "GCF_009068765.1", "organism": "Sulfurimonas hydrogeniphila", "title": "Sulfurimonas hydrogeniphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources of PR China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009068765.1", "bioproject": "PRJNA224116", "biosample": "SAMN10797496", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2509341", "species_taxid": "2509341", "organism_name": "Sulfurimonas hydrogeniphila", "infraspecific_name": "strain=NW10", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/16", "asm_name": "ASM906876v1", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources of PR China", "gbrs_paired_asm": "GCA_009068765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/068/765/GCF_009068765.1_ASM906876v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2342011", "genome_size_ungapped": "2342011", "gc_percent": "37.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009068765.1-RS_2024_05_27", "annotation_date": "2024-05-27", "total_gene_count": "2490", "protein_coding_gene_count": "2408", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-16", "dateModified": "2019-10-16", "datePublished": "2019-10-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfurimonas hydrogeniphila" ], "sample_taxid": [ "2509341" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "0.654 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2342011", "Number of Sequences": "1", "Longest Sequences (bp)": "2342011", "N50 (bp)": "2342011", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "2437", "Average Protein Length": "297.1", "Coding Ratio (%)": "92.7", "Number of rRNAs": "12", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurimonas hydrogeniphila", "strain": "strain=NW10", "accession": "GCA_009068765.1", "taxid": 2509341, "species_taxid": 2509341, 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95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas lithotrophica", "strain": "strain=GYSZ_1", "accession": "GCA_009258225.1", "taxid": 2590022, "species_taxid": 2590022, "relation_to_type": "type", "validated": true, "ani": 78.1333, "matched_fragments": 122, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas marisnigri", "strain": "strain=SoZ1", "accession": "GCA_015265475.1", "taxid": 2740405, "species_taxid": 2740405, "relation_to_type": "type", "validated": true, "ani": 78.1081, "matched_fragments": 119, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas baltica", "strain": "strain=GD2", "accession": "GCA_015265455.1", "taxid": 2740404, "species_taxid": 2740404, "relation_to_type": "type", "validated": true, "ani": 77.9754, "matched_fragments": 130, "total_fragments": 780, "ani_threshold": 95, "status": "below_threshold" } ], 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