{ "type": "genome", "identifier": "GCF_009176285.1", "organism": "Rhodococcus aetherivorans", "title": "Rhodococcus aetherivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Osaka University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009176285.1", "bioproject": "PRJNA224116", "biosample": "SAMD00186790", "wgs_master": "BLAH00000000.1", "refseq_category": "na", "taxid": "191292", "species_taxid": "191292", "organism_name": "Rhodococcus aetherivorans", "infraspecific_name": "strain=JCM 14343", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/11", "asm_name": "ASM917628v1", "asm_submitter": "Osaka University", "gbrs_paired_asm": "GCA_009176285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/176/285/GCF_009176285.1_ASM917628v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6442200", "genome_size_ungapped": "6438897", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "265", "contig_count": "265", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009176285.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "6067", "protein_coding_gene_count": "5879", "non_coding_gene_count": "59", "pubmed_id": "29696449" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-11", "dateModified": "2019-10-11", "datePublished": "2019-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodococcus aetherivorans" ], "sample_taxid": [ "191292" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.740 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6433957", "Number of Sequences": "212", "Longest Sequences (bp)": "504978", "N50 (bp)": "159427", "Gap Ratio (%)": "0.051337", "GCcontent (%)": "70.3", "Number of CDSs": "5918", "Average Protein Length": "320.3", "Coding Ratio (%)": "88.4", "Number of rRNAs": "2", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodococcus aetherivorans", "strain": "strain=JCM 14343", "accession": "GCA_009176285.1", "taxid": 191292, "species_taxid": 191292, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2062, "total_fragments": 2069, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodococcus aetherivorans", "strain": "strain=DSM 44752", "accession": "GCA_011058165.1", "taxid": 191292, "species_taxid": 191292, "relation_to_type": "type", "validated": true, "ani": 99.9524, "matched_fragments": 1995, "total_fragments": 2069, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodococcus ruber", "strain": "strain=NBRC 15591", "accession": "GCA_001894945.1", "taxid": 1830, "species_taxid": 1830, "relation_to_type": "type", "validated": true, "ani": 91.9853, "matched_fragments": 1529, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus ruber", "strain": "strain=DSM 43338", "accession": "GCA_001646835.1", "taxid": 1830, "species_taxid": 1830, "relation_to_type": "type", "validated": true, "ani": 91.8703, "matched_fragments": 1476, "total_fragments": 2069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"coccobacillus_cell_shape": 0.157, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Rhodococcus", "aetherivorans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }