{
    "type": "genome",
    "identifier": "GCF_009176545.1",
    "organism": "Salinigranum salinum",
    "title": "Salinigranum salinum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu Universiry",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009176545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12651047",
        "wgs_master": "VTOJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1364937",
        "species_taxid": "1364937",
        "organism_name": "Salinigranum salinum",
        "infraspecific_name": "strain=YJ-50-S2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/18",
        "asm_name": "ASM917654v1",
        "asm_submitter": "Jiangsu Universiry",
        "gbrs_paired_asm": "GCA_009176545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/176/545/GCF_009176545.1_ASM917654v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4690830",
        "genome_size_ungapped": "4690830",
        "gc_percent": "67.000000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009176545.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4523",
        "protein_coding_gene_count": "4420",
        "non_coding_gene_count": "54",
        "pubmed_id": "27151192"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-18",
    "dateModified": "2019-10-18",
    "datePublished": "2019-10-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Salinigranum salinum"
        ],
        "sample_taxid": [
            "1364937"
        ],
        "sample_host_organism": [
            "Cui Henglin"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guangdong Province"
        ],
        "sample_host_location_id": [],
        "data_size": "1.268 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4690830",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "2436551",
        "N50 (bp)": "2436551",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.9",
        "Number of CDSs": "4477",
        "Average Protein Length": "295.5",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Salinigranum salinum",
                "strain": "strain=YJ-50-S2",
                "accession": "GCA_009176545.1",
                "taxid": 1364937,
                "species_taxid": 1364937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1561,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salinigranum rubrum",
                "strain": "strain=GX10",
                "accession": "GCA_002906575.1",
                "taxid": 755307,
                "species_taxid": 755307,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0072,
                "matched_fragments": 898,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinigranum halophilum",
                "strain": "strain=YJ-53",
                "accession": "GCA_007004735.1",
                "taxid": 2565931,
                "species_taxid": 2565931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7019,
                "matched_fragments": 851,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halegenticoccus tardaugens",
                "strain": "strain=SYSU A00711",
                "accession": "GCA_004116405.1",
                "taxid": 2071624,
                "species_taxid": 2071624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6621,
                "matched_fragments": 538,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax gibbonsii",
                "strain": "strain=ATCC 33959",
                "accession": "GCA_000336775.1",
                "taxid": 35746,
                "species_taxid": 35746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5864,
                "matched_fragments": 556,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus litoreus",
                "strain": "strain=GX31",
                "accession": "GCA_024464595.1",
                "taxid": 755310,
                "species_taxid": 755310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4414,
                "matched_fragments": 522,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax volcanii",
                "strain": "strain=DS2",
                "accession": "GCA_000337315.1",
                "taxid": 2246,
                "species_taxid": 2246,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3389,
                "matched_fragments": 567,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloplanus natans",
                "strain": "strain=DSM 17983",
                "accession": "GCA_000427685.1",
                "taxid": 376171,
                "species_taxid": 376171,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8855,
                "matched_fragments": 454,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobaculum gomorrense",
                "strain": "strain=DSM 9297",
                "accession": "GCA_900129775.1",
                "taxid": 43928,
                "species_taxid": 43928,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6755,
                "matched_fragments": 487,
                "total_fragments": 1561,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009176545.1",
                "gtdb_species": "s__Salinigranum salinum",
                "ani": 100.0,
                "matched_fragments": 1561,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Salinigranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002906575.1",
                "gtdb_species": "s__Salinigranum rubrum",
                "ani": 83.023,
                "matched_fragments": 896,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Salinigranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007004735.1",
                "gtdb_species": "s__Salinigranum halophilum",
                "ani": 82.7227,
                "matched_fragments": 848,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Salinigranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_004116405.1",
                "gtdb_species": "s__Halegenticoccus sp004116405",
                "ani": 78.662,
                "matched_fragments": 537,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halegenticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000336775.1",
                "gtdb_species": "s__Haloferax gibbonsii",
                "ani": 78.6268,
                "matched_fragments": 551,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 96.8304,
                "mean_intra_species_ani": "98.89",
                "min_intra_species_ani": "98.78",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000025685.1",
                "gtdb_species": "s__Haloferax volcanii",
                "ani": 78.3633,
                "matched_fragments": 564,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "96.62",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_000495475.1",
                "gtdb_species": "s__Halobaculum tyrrellense",
                "ani": 78.0454,
                "matched_fragments": 501,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009762275.1",
                "gtdb_species": "s__Haloplanus rallus",
                "ani": 78.0078,
                "matched_fragments": 515,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloplanus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003020945.1",
                "gtdb_species": "s__Halobaculum sp003020945",
                "ani": 77.7387,
                "matched_fragments": 450,
                "total_fragments": 1561,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4973120.0,
        "gc_content": 65.693,
        "coding_genes": 4489.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 48.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Salinigranum",
        "salinum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}