{ "type": "genome", "identifier": "GCF_009184635.1", "organism": "Rudanella paleaurantiibacter", "title": "Rudanella paleaurantiibacter", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009184635.1", "bioproject": "PRJNA224116", "biosample": "SAMN12795365", "wgs_master": "WELI00000000.1", "refseq_category": "reference genome", "taxid": "2614655", "species_taxid": "2614655", "organism_name": "Rudanella paleaurantiibacter", "infraspecific_name": "strain=HX-22-17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/19", "asm_name": "ASM918463v1", "asm_submitter": "Nanjing Agricultural university", "gbrs_paired_asm": "GCA_009184635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/184/635/GCF_009184635.1_ASM918463v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6724076", "genome_size_ungapped": "6724076", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009184635.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5327", "protein_coding_gene_count": "5261", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-19", "dateModified": "2019-10-19", "datePublished": "2019-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Rudanella paleaurantiibacter" ], "sample_taxid": [ "2614655" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Anhui" ], "sample_host_location_id": [], "data_size": "1.908 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6724076", "Number of Sequences": "34", "Longest Sequences (bp)": "1257572", "N50 (bp)": "733149", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.1", "Number of CDSs": "5310", "Average Protein Length": "372.5", "Coding Ratio (%)": "88.2", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rudanella paleaurantiibacter", "strain": "strain=HX-22-17", "accession": "GCA_009184635.1", "taxid": 2614655, "species_taxid": 2614655, 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"status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 76.5802, "matched_fragments": 303, "total_fragments": 2225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aquatilis", "strain": "strain=HMF5036", "accession": "GCA_017353255.1", "taxid": 2817059, "species_taxid": 2817059, "relation_to_type": "type", "validated": true, "ani": 76.5716, "matched_fragments": 335, "total_fragments": 2225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 76.4633, "matched_fragments": 181, "total_fragments": 2225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aerolatum", 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