{
    "type": "genome",
    "identifier": "GCF_009192735.1",
    "organism": "Arthrobacter gandavensis",
    "title": "Arthrobacter gandavensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Center for Disease Control and Prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009192735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12638716",
        "wgs_master": "VTFU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "169960",
        "species_taxid": "169960",
        "organism_name": "Arthrobacter gandavensis",
        "infraspecific_name": "strain=JCM 13316",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/21",
        "asm_name": "ASM919273v1",
        "asm_submitter": "Chinese Center for Disease Control and Prevention",
        "gbrs_paired_asm": "GCA_009192735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/192/735/GCF_009192735.1_ASM919273v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3722081",
        "genome_size_ungapped": "3722081",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009192735.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "3513",
        "protein_coding_gene_count": "3423",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-21",
    "dateModified": "2019-10-21",
    "datePublished": "2019-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Arthrobacter gandavensis"
        ],
        "sample_taxid": [
            "169960"
        ],
        "sample_host_organism": [
            "dairy cow"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belgium"
        ],
        "sample_host_location_id": [],
        "data_size": "1.034 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3722081",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "1264805",
        "N50 (bp)": "788110",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.4",
        "Number of CDSs": "3501",
        "Average Protein Length": "319.8",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "4",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Arthrobacter gandavensis",
                "strain": "strain=JCM 13316",
                "accession": "GCA_009192735.1",
                "taxid": 169960,
                "species_taxid": 169960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1234,
                "total_fragments": 1234,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Arthrobacter jiangjiafuii",
                "strain": "strain=zg-ZUI227",
                "accession": "GCA_017898065.1",
                "taxid": 2817475,
                "species_taxid": 2817475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5673,
                "matched_fragments": 800,
                "total_fragments": 1234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter jiangjiafuii",
                "strain": "strain=zg-ZUI227",
                "accession": "GCA_018622995.1",
                "taxid": 2817475,
                "species_taxid": 2817475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4941,
                "matched_fragments": 811,
                "total_fragments": 1234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter sunyaminii",
                "strain": "strain=zg-ZUI122",
                "accession": "GCA_018866305.1",
                "taxid": 2816859,
                "species_taxid": 2816859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2956,
                "matched_fragments": 795,
                "total_fragments": 1234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter sunyaminii",
                "strain": "strain=zg-ZUI122",
                "accession": "GCA_017353495.1",
                "taxid": 2816859,
                "species_taxid": 2816859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.248,
                "matched_fragments": 804,
                "total_fragments": 1234,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter gallicola",
                "strain": "strain=Sa2CUA1",
                "accession": "GCA_014836775.1",
                "taxid": 2762225,
                "species_taxid": 2762225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2577,
                "matched_fragments": 546,
                "total_fragments": 1234,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009192735.1",
                "gtdb_species": "s__Arthrobacter_B gandavensis",
                "ani": 100.0,
                "matched_fragments": 1234,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018622995.1",
                "gtdb_species": "s__Arthrobacter_B sp018622995",
                "ani": 83.486,
                "matched_fragments": 812,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_018866305.1",
                "gtdb_species": "s__Arthrobacter_B sp002929435",
                "ani": 83.2956,
                "matched_fragments": 795,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "96.67",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_009192775.1",
                "gtdb_species": "s__Arthrobacter_B yangruifuii",
                "ani": 81.0395,
                "matched_fragments": 603,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014836875.1",
                "gtdb_species": "s__Arthrobacter_B sp014836875",
                "ani": 80.5701,
                "matched_fragments": 532,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900016675.1",
                "gtdb_species": "s__Arthrobacter_B saudimassiliensis",
                "ani": 80.3347,
                "matched_fragments": 596,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014836775.1",
                "gtdb_species": "s__Arthrobacter_B sp014836775",
                "ani": 80.268,
                "matched_fragments": 545,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001307035.1",
                "gtdb_species": "s__Arthrobacter_B sp001307035",
                "ani": 80.2432,
                "matched_fragments": 536,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009192745.1",
                "gtdb_species": "s__Arthrobacter_B citreus",
                "ani": 80.2423,
                "matched_fragments": 543,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000482545.1",
                "gtdb_species": "s__Specibacter sp000482545",
                "ani": 79.3876,
                "matched_fragments": 354,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900168135.1",
                "gtdb_species": "s__Arthrobacter_I sp900168135",
                "ani": 78.7372,
                "matched_fragments": 364,
                "total_fragments": 1234,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.10",
                "min_intra_species_ani": "95.10",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.105,
        "cell_length": 0.019,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 26.833,
        "optimum_ph": 7.7,
        "genome_size": 4207472.204,
        "gc_content": 64.7,
        "coding_genes": 3997.0,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 50.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.235,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.8,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.2,
        "bacillus_cell_shape": 0.466,
        "coccus_cell_shape": 0.333,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.2,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Arthrobacter",
        "gandavensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}