{ "type": "genome", "identifier": "GCF_009192775.1", "organism": "Arthrobacter yangruifuii", "title": "Arthrobacter yangruifuii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009192775.1", "bioproject": "PRJNA224116", "biosample": "SAMN12640653", "wgs_master": "VTFX00000000.1", "refseq_category": "reference genome", "taxid": "2606616", "species_taxid": "2606616", "organism_name": "Arthrobacter yangruifuii", "infraspecific_name": "strain=785", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/21", "asm_name": "ASM919277v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_009192775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/192/775/GCF_009192775.1_ASM919277v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3535373", "genome_size_ungapped": "3535373", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009192775.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3290", "protein_coding_gene_count": "3206", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-21", "dateModified": "2019-10-21", "datePublished": "2019-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter yangruifuii" ], "sample_taxid": [ "2606616" ], "sample_host_organism": [ "plateau pika" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai-TIbetan plateau" ], "sample_host_location_id": [], "data_size": "0.979 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3535373", "Number of Sequences": "9", "Longest Sequences (bp)": "1259651", "N50 (bp)": "791089", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "3281", "Average Protein Length": "323.5", "Coding Ratio (%)": "90.1", "Number of rRNAs": "6", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter yangruifuii", "strain": "strain=785", "accession": "GCA_009192775.1", "taxid": 2606616, "species_taxid": 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"matched_fragments": 541, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter citreus", "strain": "strain=DSM 20133", "accession": "GCA_009192745.1", "taxid": 1670, "species_taxid": 1670, "relation_to_type": "type", "validated": true, "ani": 80.4929, "matched_fragments": 561, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter luteolus", "strain": "strain=NBRC 107841", "accession": "GCA_001552075.1", "taxid": 98672, "species_taxid": 98672, "relation_to_type": "type", "validated": true, "ani": 80.3953, "matched_fragments": 558, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pullicola", "strain": "strain=Sa2BUA2", "accession": "GCA_014836875.1", "taxid": 2762224, "species_taxid": 2762224, "relation_to_type": "type", "validated": true, "ani": 80.3796, "matched_fragments": 547, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter luteolus", "strain": "strain=DSM 13067", "accession": "GCA_008973725.1", "taxid": 98672, "species_taxid": 98672, "relation_to_type": "type", "validated": true, "ani": 80.3272, "matched_fragments": 575, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter gallicola", "strain": "strain=Sa2CUA1", "accession": "GCA_014836775.1", "taxid": 2762225, "species_taxid": 2762225, "relation_to_type": "type", "validated": true, "ani": 80.2715, "matched_fragments": 542, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cupressi", "strain": "strain=DSM 24664", "accession": "GCA_013409905.1", "taxid": 1045773, "species_taxid": 1045773, "relation_to_type": "type", "validated": true, "ani": 78.7822, "matched_fragments": 370, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" } ], 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