{ "type": "genome", "identifier": "GCF_009193215.1", "organism": "Flavicella marina", "title": "Flavicella marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Qingdao Institute of Bioenergy and Bioprocess Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009193215.1", "bioproject": "PRJNA224116", "biosample": "SAMN12792692", "wgs_master": "VYVA00000000.1", "refseq_category": "reference genome", "taxid": "1475951", "species_taxid": "1475951", "organism_name": "Flavicella marina", "infraspecific_name": "strain=2A-7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/21", "asm_name": "ASM919321v1", "asm_submitter": "Qingdao Institute of Bioenergy and Bioprocess Technology", "gbrs_paired_asm": "GCA_009193215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/193/215/GCF_009193215.1_ASM919321v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3155507", "genome_size_ungapped": "3155507", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009193215.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2682", "protein_coding_gene_count": "2621", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-21", "dateModified": "2019-10-21", "datePublished": "2019-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavicella marina" ], "sample_taxid": [ "1475951" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Kochi Prefecture, Muroto City" ], "sample_host_location_id": [], "data_size": "0.881 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3155507", "Number of Sequences": "20", "Longest Sequences (bp)": "1200080", "N50 (bp)": "487586", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.9", "Number of CDSs": "2629", "Average Protein Length": "366.7", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavicella marina", "strain": "strain=2A-7", "accession": "GCA_009193215.1", "taxid": 1475951, "species_taxid": 1475951, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1045, "total_fragments": 1047, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavicella sediminum", "strain": "strain=ALS 84", "accession": "GCA_006381105.1", "taxid": 2585141, "species_taxid": 2585141, "relation_to_type": "type", "validated": true, "ani": 78.9019, "matched_fragments": 339, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenyingzhuangia fucanilytica", "strain": "strain=CZ1127", "accession": "GCA_001697185.1", "taxid": 1790137, "species_taxid": 1790137, "relation_to_type": "type", "validated": true, "ani": 77.8881, "matched_fragments": 180, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenyingzhuangia heitensis", "strain": "strain=DSM 101599", "accession": "GCA_011762155.1", "taxid": 1487859, "species_taxid": 1487859, "relation_to_type": "type", "validated": true, "ani": 77.6695, "matched_fragments": 181, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pacificus", "strain": "strain=CGMCC 1.15763", "accession": "GCA_014643655.1", "taxid": 1775173, "species_taxid": 1775173, "relation_to_type": "type", "validated": true, "ani": 77.5707, "matched_fragments": 102, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenyingzhuangia aestuarii", "strain": "strain=DSM 105044", "accession": "GCA_011927765.1", "taxid": 1647582, "species_taxid": 1647582, "relation_to_type": "type", "validated": true, "ani": 77.4838, "matched_fragments": 193, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aquimarinus", "strain": "strain=ZY113", "accession": "GCA_003129485.1", "taxid": 2100726, "species_taxid": 2100726, "relation_to_type": "type", "validated": true, "ani": 77.2484, "matched_fragments": 141, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter sejongensis", "strain": "strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, "species_taxid": 985043, "relation_to_type": "type", "validated": true, "ani": 77.2005, "matched_fragments": 149, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 77.1982, "matched_fragments": 155, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=DSW-5", "accession": "GCA_900106865.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 77.1571, "matched_fragments": 136, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=DSW-5", "accession": "GCA_001280865.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 77.1324, "matched_fragments": 140, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 77.0434, "matched_fragments": 155, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum jejuense", "strain": "strain=type strain: KCTC 22618", "accession": "GCA_900198195.1", "taxid": 584609, "species_taxid": 584609, "relation_to_type": "type", "validated": true, "ani": 76.9187, "matched_fragments": 121, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum mesophilum", "strain": "strain=DSM 13764", "accession": "GCA_009362255.1", "taxid": 104268, "species_taxid": 104268, "relation_to_type": "type", "validated": true, "ani": 76.8737, "matched_fragments": 128, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum mesophilum", "strain": "strain=DSM 13764", "accession": "GCA_900129475.1", "taxid": 104268, "species_taxid": 104268, "relation_to_type": "type", "validated": true, "ani": 76.8608, "matched_fragments": 126, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum holothuriorum", "strain": "strain=S2-2", "accession": "GCA_002120225.1", "taxid": 1635173, "species_taxid": 1635173, "relation_to_type": "type", "validated": true, "ani": 76.8213, "matched_fragments": 116, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_001680875.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 76.8042, "matched_fragments": 168, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_002814055.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 76.6425, "matched_fragments": 172, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Urechidicola croceus", "strain": "strain=LPB0138", "accession": "GCA_001761325.1", "taxid": 1850246, "species_taxid": 1850246, "relation_to_type": "type", "validated": true, "ani": 76.6132, "matched_fragments": 130, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.5564, "matched_fragments": 90, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009193215.1", "gtdb_species": "s__Flavicella marina", "ani": 100.0, "matched_fragments": 1046, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006381105.1", "gtdb_species": "s__Flavicella sediminum", "ani": 78.8714, "matched_fragments": 340, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905479475.1", "gtdb_species": "s__Flavicella sp905479475", "ani": 78.179, "matched_fragments": 168, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001697185.1", "gtdb_species": "s__Wenyingzhuangia fucanilytica", "ani": 77.8675, "matched_fragments": 181, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wenyingzhuangia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011762155.1", "gtdb_species": "s__Wenyingzhuangia heitensis", "ani": 77.6732, "matched_fragments": 180, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wenyingzhuangia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002477565.1", "gtdb_species": "s__Flavicella sp002477565", "ani": 77.6048, "matched_fragments": 102, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014643655.1", "gtdb_species": "s__Polaribacter_A pacificus", "ani": 77.5686, "matched_fragments": 102, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011927765.1", "gtdb_species": "s__Wenyingzhuangia aestuarii", "ani": 77.4825, "matched_fragments": 193, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wenyingzhuangia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003129485.1", "gtdb_species": "s__Polaribacter sp003129485", "ani": 77.247, "matched_fragments": 142, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001280865.1", "gtdb_species": "s__Polaribacter dokdonensis", "ani": 77.1522, "matched_fragments": 138, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900105985.1", "gtdb_species": "s__Tenacibaculum sp900105985", "ani": 77.0162, "matched_fragments": 128, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900105145.1", "gtdb_species": "s__Polaribacter sp900105145", "ani": 77.0003, "matched_fragments": 168, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016858305.2", "gtdb_species": "s__Polaribacter sp016858305", "ani": 76.9528, "matched_fragments": 175, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900198195.1", "gtdb_species": "s__Tenacibaculum jejuense", "ani": 76.9187, "matched_fragments": 121, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646675.1", "gtdb_species": "s__Lutibacter litoralis", "ani": 76.8858, "matched_fragments": 140, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001975665.1", "gtdb_species": "s__Polaribacter reichenbachii", "ani": 76.8092, "matched_fragments": 168, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018054895.1", "gtdb_species": "s__Lutibacter sp018054895", "ani": 76.4276, "matched_fragments": 117, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Flavicella", "marina" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }