{ "type": "genome", "identifier": "GCF_009193355.1", "organism": "Bifidobacterium leontopitheci", "title": "Bifidobacterium leontopitheci", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Parma", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009193355.1", "bioproject": "PRJNA224116", "biosample": "SAMN12840021", "wgs_master": "WBVT00000000.1", "refseq_category": "reference genome", "taxid": "2650774", "species_taxid": "2650774", "organism_name": "Bifidobacterium leontopitheci", "infraspecific_name": "strain=LMG 31471", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/21", "asm_name": "ASM919335v1", "asm_submitter": "University of Parma", "gbrs_paired_asm": "GCA_009193355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/193/355/GCF_009193355.1_ASM919335v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3030672", "genome_size_ungapped": "3030672", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009193355.1-RS_2024_11_20", "annotation_date": "2024-11-20", "total_gene_count": "2210", "protein_coding_gene_count": "2103", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-21", "dateModified": "2019-10-21", "datePublished": "2019-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium leontopitheci" ], "sample_taxid": [ "2650774" ], "sample_host_organism": [ "golden-headed lion tamarin" ], "sample_host_organism_id": [], "sample_host_disease": [], 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"organism_name": "Bifidobacterium bifidum", "strain": "strain=JCM 1255", "accession": "GCA_001025135.1", "taxid": 1681, "species_taxid": 1681, "relation_to_type": "type", "validated": true, "ani": 83.2639, "matched_fragments": 487, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium bifidum", "strain": "strain=LMG 11041", "accession": "GCA_000741085.1", "taxid": 1681, "species_taxid": 1681, "relation_to_type": "type", "validated": true, "ani": 83.2195, "matched_fragments": 493, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium bifidum", "strain": "strain=DSM 20456", "accession": "GCA_000771485.1", "taxid": 1681, "species_taxid": 1681, "relation_to_type": "type", "validated": true, "ani": 83.0975, "matched_fragments": 492, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium samirii", "strain": 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