{ "type": "genome", "identifier": "GCF_009299475.1", "organism": "Bifidobacterium avesanii", "title": "Bifidobacterium avesanii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Parma", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009299475.1", "bioproject": "PRJNA224116", "biosample": "SAMN12871579", "wgs_master": "WBSN00000000.1", "refseq_category": "reference genome", "taxid": "1798157", "species_taxid": "1798157", "organism_name": "Bifidobacterium avesanii", "infraspecific_name": "strain=DSM 100685", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/23", "asm_name": "ASM929947v1", "asm_submitter": "University of Parma", "gbrs_paired_asm": "GCA_009299475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/299/475/GCF_009299475.1_ASM929947v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2684414", "genome_size_ungapped": "2684414", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009299475.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "2138", "protein_coding_gene_count": "2050", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-23", "dateModified": "2019-10-23", "datePublished": "2019-10-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium avesanii" ], "sample_taxid": [ "1798157" ], "sample_host_organism": [ "Saguinus oedipus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "0.738 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2684414", "Number of Sequences": "46", "Longest Sequences (bp)": "338714", "N50 (bp)": "136224", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.3", "Number of CDSs": "2087", "Average Protein Length": "362.4", "Coding Ratio (%)": "84.5", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium avesanii", "strain": "strain=DSM 100685", "accession": "GCA_009299475.1", "taxid": 1798157, "species_taxid": 1798157, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 865, "total_fragments": 867, 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