{ "type": "genome", "identifier": "GCF_009299835.1", "organism": "Microlunatus speluncae", "title": "Microlunatus speluncae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009299835.1", "bioproject": "PRJNA224116", "biosample": "SAMN12241983", "wgs_master": "VKCZ00000000.1", "refseq_category": "reference genome", "taxid": "2594267", "species_taxid": "2594267", "organism_name": "Microlunatus speluncae", "infraspecific_name": "strain=SYSU K12189", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/25", "asm_name": "ASM929983v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_009299835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/299/835/GCF_009299835.1_ASM929983v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6787844", "genome_size_ungapped": "6787844", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009299835.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "6295", "protein_coding_gene_count": "6212", "non_coding_gene_count": "50", "pubmed_id": "31485839" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-25", "dateModified": "2019-10-25", "datePublished": "2019-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Microlunatus speluncae" ], "sample_taxid": [ "2594267" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xingyi City, Guizhou" ], "sample_host_location_id": [], "data_size": "1.817 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6787844", "Number of Sequences": "21", "Longest Sequences (bp)": "894118", "N50 (bp)": "526611", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.4", "Number of CDSs": "6311", "Average Protein Length": "324.2", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microlunatus speluncae", "strain": "strain=SYSU K12189", "accession": "GCA_009299835.1", "taxid": 2594267, "species_taxid": 2594267, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2254, "total_fragments": 2254, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microlunatus parietis", "strain": "strain=DSM 22083", "accession": "GCA_013407955.1", "taxid": 682979, "species_taxid": 682979, "relation_to_type": "type", "validated": true, "ani": 83.8938, "matched_fragments": 1582, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus kandeliicorticis", "strain": "strain=DSM 100723", "accession": "GCA_014137855.1", "taxid": 1759536, "species_taxid": 1759536, "relation_to_type": "type", "validated": true, "ani": 78.5579, "matched_fragments": 664, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus panaciterrae", "strain": "strain=DSM 18662", "accession": "GCA_016907535.1", "taxid": 400768, "species_taxid": 400768, "relation_to_type": "type", "validated": true, "ani": 78.5572, "matched_fragments": 563, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus elymi", "strain": "strain=KUDC0627", "accession": "GCA_007362775.1", "taxid": 2596828, "species_taxid": 2596828, "relation_to_type": "type", "validated": true, "ani": 78.3045, "matched_fragments": 626, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus endophyticus", "strain": "strain=CGMCC 4.7306", "accession": "GCA_014646195.1", "taxid": 1716077, "species_taxid": 1716077, "relation_to_type": "type", "validated": true, "ani": 77.9036, "matched_fragments": 554, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus soli", "strain": "strain=DSM 21800", "accession": "GCA_900105385.1", "taxid": 630515, "species_taxid": 630515, "relation_to_type": "type", "validated": true, "ani": 77.8907, "matched_fragments": 777, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 77.8898, "matched_fragments": 506, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", "strain": "strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 77.735, "matched_fragments": 582, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus flavus", "strain": "strain=CGMCC 4.6856", "accession": "GCA_900110855.1", "taxid": 1036181, "species_taxid": 1036181, "relation_to_type": "type", "validated": true, "ani": 77.5657, "matched_fragments": 560, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 77.447, "matched_fragments": 531, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 77.092, "matched_fragments": 555, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 77.0579, "matched_fragments": 567, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 76.955, "matched_fragments": 521, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 76.7401, "matched_fragments": 607, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009299835.1", "gtdb_species": "s__Microlunatus_B speluncae", "ani": 100.0, "matched_fragments": 2254, "total_fragments": 2254, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Microlunatus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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