{ "type": "genome", "identifier": "GCF_009363415.1", "organism": "Vibrio aquimaris", "title": "Vibrio aquimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uni Bielefeld", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009363415.1", "bioproject": "PRJNA224116", "biosample": "SAMN11996127", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2587862", "species_taxid": "2587862", "organism_name": "Vibrio aquimaris", "infraspecific_name": "strain=THAF100", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/28", "asm_name": "ASM936341v1", "asm_submitter": "Uni Bielefeld", "gbrs_paired_asm": "GCA_009363415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/363/415/GCF_009363415.1_ASM936341v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4501013", "genome_size_ungapped": "4501013", "gc_percent": "42.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009363415.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4124", "protein_coding_gene_count": "3906", "non_coding_gene_count": "137", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-28", "dateModified": "2019-10-28", "datePublished": "2019-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio aquimaris" ], "sample_taxid": [ "2587862" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Animal Facility, Justus-Liebig-University, Giessen" ], "sample_host_location_id": [], "data_size": "1.278 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4501013", "Number of Sequences": "4", "Longest Sequences (bp)": "3138671", "N50 (bp)": "3138671", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.7", "Number of CDSs": "3988", "Average Protein Length": "324.5", "Coding Ratio (%)": "86.3", "Number of rRNAs": "28", "Number of tRNAs": "104", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio aquimaris", "strain": "strain=THAF100", "accession": "GCA_009363415.1", "taxid": 2587862, "species_taxid": 2587862, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1498, "total_fragments": 1499, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio pectenicida", "strain": "strain=LMG 19642", "accession": "GCA_024347015.1", "taxid": 62763, "species_taxid": 62763, "relation_to_type": "type", "validated": true, "ani": 81.5025, "matched_fragments": 900, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pectenicida", "strain": "strain=CAIM 594", "accession": "GCA_003937805.1", "taxid": 62763, "species_taxid": 62763, "relation_to_type": "type", "validated": true, "ani": 81.3383, "matched_fragments": 831, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000772105.1", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4413, "matched_fragments": 315, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hippocampi", "strain": "strain=CECT 8226", "accession": "GCA_921292975.1", "taxid": 654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 80.2452, "matched_fragments": 177, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marisflavi", "strain": "strain=CECT 7928", "accession": "GCA_921294215.1", "taxid": 1216040, "species_taxid": 1216040, "relation_to_type": "type", "validated": true, "ani": 80.1846, "matched_fragments": 192, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 80.1156, "matched_fragments": 338, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio parahaemolyticus", "strain": "strain=NCTC10903", "accession": "GCA_900460535.1", "taxid": 670, "species_taxid": 670, "relation_to_type": "type", "validated": true, "ani": 80.0962, "matched_fragments": 248, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliilyticus", "strain": "strain=ATCC BAA-450", "accession": "GCA_000176135.1", "taxid": 190893, "species_taxid": 190893, "relation_to_type": "type", "validated": true, "ani": 80.0363, "matched_fragments": 475, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8234, "matched_fragments": 298, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio penaeicida", "strain": "strain=IFO 15640", "accession": "GCA_019977755.1", "taxid": 104609, "species_taxid": 104609, "relation_to_type": "type", "validated": true, "ani": 79.7356, "matched_fragments": 205, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.5888, "matched_fragments": 273, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 79.5198, "matched_fragments": 304, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio splendidus", "strain": "strain=LMG 19031", "accession": "GCA_024347615.1", "taxid": 29497, "species_taxid": 29497, "relation_to_type": "type", "validated": true, "ani": 79.4027, 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95, "status": "below_threshold" }, { "organism_name": "Vibrio sonorensis", "strain": "strain=CAIM 1076", "accession": "GCA_001854765.1", "taxid": 1004316, "species_taxid": 1004316, "relation_to_type": "type", "validated": true, "ani": 78.7992, "matched_fragments": 253, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009363415.1", "gtdb_species": "s__Vibrio aquimaris", "ani": 100.0, "matched_fragments": 1498, "total_fragments": 1499, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003350295.1", "gtdb_species": "s__Vibrio 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