{ "type": "genome", "identifier": "GCF_009363855.1", "organism": "Microvirga thermotolerans", "title": "Microvirga thermotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009363855.1", "bioproject": "PRJNA224116", "biosample": "SAMN13067488", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2651334", "species_taxid": "2651334", "organism_name": "Microvirga thermotolerans", "infraspecific_name": "strain=HR1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/28", "asm_name": "ASM936385v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_009363855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/363/855/GCF_009363855.1_ASM936385v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3823049", "genome_size_ungapped": "3823049", "gc_percent": "67.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009363855.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3633", "protein_coding_gene_count": "3551", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-28", "dateModified": "2019-10-28", "datePublished": "2019-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga thermotolerans" ], "sample_taxid": [ "2651334" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Wuchang, northeast of China." ], "sample_host_location_id": [], "data_size": "1.041 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3823049", "Number of Sequences": "1", "Longest Sequences (bp)": "3823049", "N50 (bp)": "3823049", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "3637", "Average Protein Length": "311.1", "Coding Ratio (%)": "88.8", "Number of rRNAs": "6", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga thermotolerans", "strain": "strain=HR1", "accession": "GCA_009363855.1", "taxid": 2651334, "species_taxid": 2651334, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1273, "total_fragments": 1274, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 82.7102, "matched_fragments": 779, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga subterranea", "strain": "strain=DSM 14364", "accession": "GCA_003350535.1", "taxid": 186651, "species_taxid": 186651, "relation_to_type": "type", "validated": true, "ani": 82.6435, "matched_fragments": 829, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 82.3385, "matched_fragments": 786, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 81.9876, "matched_fragments": 796, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga ossetica", "strain": "strain=V5/3M", "accession": "GCA_002741015.1", "taxid": 1882682, "species_taxid": 1882682, "relation_to_type": "type", "validated": true, "ani": 81.9316, "matched_fragments": 794, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 81.7703, "matched_fragments": 741, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 81.6187, "matched_fragments": 789, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, "species_taxid": 1682650, "relation_to_type": "type", "validated": true, "ani": 81.606, "matched_fragments": 720, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga arabica", "strain": "strain=SV2184P", "accession": "GCA_016811235.1", "taxid": 1128671, "species_taxid": 1128671, "relation_to_type": "type", "validated": true, "ani": 81.543, "matched_fragments": 754, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga rosea", "strain": "strain=CGMCC1.16488", "accession": "GCA_020595095.1", "taxid": 2715425, "species_taxid": 2715425, "relation_to_type": "type", "validated": true, "ani": 81.4319, "matched_fragments": 798, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas soli", "strain": "strain=BN140002", "accession": "GCA_008386575.1", "taxid": 1638099, "species_taxid": 1638099, "relation_to_type": "type", "validated": true, "ani": 79.7156, "matched_fragments": 581, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 78.7855, "matched_fragments": 548, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009363855.1", "gtdb_species": "s__Microvirga thermotolerans", "ani": 100.0, "matched_fragments": 1274, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003151255.1", "gtdb_species": "s__Microvirga sp003151255", "ani": 85.3947, "matched_fragments": 921, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009910705.1", "gtdb_species": "s__Microvirga sp009910705", "ani": 82.9836, "matched_fragments": 848, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003350535.1", "gtdb_species": "s__Microvirga subterranea", "ani": 82.6379, "matched_fragments": 829, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000518665.1", "gtdb_species": "s__Microvirga flocculans", "ani": 82.3361, "matched_fragments": 786, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002741015.1", "gtdb_species": "s__Microvirga ossetica", "ani": 81.9394, "matched_fragments": 794, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013520865.1", "gtdb_species": "s__Microvirga mediterraneensis", "ani": 81.8951, "matched_fragments": 805, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016892765.1", "gtdb_species": "s__Microvirga sp016892765", "ani": 81.6229, "matched_fragments": 753, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000262405.1", "gtdb_species": "s__Microvirga lotononidis", "ani": 81.6227, "matched_fragments": 788, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004458765.1", "gtdb_species": "s__Microvirga pakistanensis", "ani": 81.5929, "matched_fragments": 723, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018069605.1", "gtdb_species": "s__Microvirga sp018069605", "ani": 81.5354, "matched_fragments": 787, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016811235.1", "gtdb_species": "s__Microvirga arabica", "ani": 81.5349, "matched_fragments": 755, "total_fragments": 1274, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.174, "cell_length": 0.209, "doubling_h": null, "growth_tmp": 35.0, "optimum_tmp": 35.4, "optimum_ph": 7.5, "genome_size": 7249828.75, "gc_content": 62.553, "coding_genes": 8581.0, "rRNA16S_genes": null, "tRNA_genes": 68.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.2, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Microvirga", "thermotolerans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }