{ "type": "genome", "identifier": "GCF_009372215.1", "organism": "Acinetobacter portensis", "title": "Acinetobacter portensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009372215.1", "bioproject": "PRJNA224116", "biosample": "SAMN04884745", "wgs_master": "LWRV00000000.1", "refseq_category": "na", "taxid": "1839785", "species_taxid": "1839785", "organism_name": "Acinetobacter portensis", "infraspecific_name": "strain=AC 877", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/28", "asm_name": "ASM937221v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_009372215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/372/215/GCF_009372215.1_ASM937221v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2897281", "genome_size_ungapped": "2896595", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "123", "contig_count": "123", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009372215.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "2825", "protein_coding_gene_count": "2675", "non_coding_gene_count": "71", "pubmed_id": "32618559" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-28", "dateModified": "2019-10-28", "datePublished": "2019-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter portensis" ], "sample_taxid": [ "1839785" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Porto" ], "sample_host_location_id": [], "data_size": "0.818 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2897281", "Number of Sequences": "123", "Longest Sequences (bp)": "141290", "N50 (bp)": "61636", "Gap Ratio (%)": "0.023677", "GCcontent (%)": "36.6", "Number of CDSs": "2722", "Average Protein Length": "302.7", "Coding Ratio (%)": "85.3", "Number of rRNAs": "3", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter portensis", "strain": "strain=AC 877", "accession": "GCA_009372215.1", "taxid": 1839785, "species_taxid": 1839785, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 909, "total_fragments": 914, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter equi", "strain": "strain=114", "accession": "GCA_001307195.1", "taxid": 1324350, "species_taxid": 1324350, "relation_to_type": "type", "validated": true, "ani": 81.1186, "matched_fragments": 539, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter cumulans", "strain": "strain=WCHAc060092", "accession": "GCA_003024525.3", "taxid": 2136182, "species_taxid": 2136182, "relation_to_type": "type", "validated": true, "ani": 81.0688, "matched_fragments": 485, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wanghuae", "strain": "strain=dk386", "accession": "GCA_009557235.1", "taxid": 2662362, "species_taxid": 2662362, "relation_to_type": "type", "validated": true, "ani": 80.9855, "matched_fragments": 450, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.979, "matched_fragments": 449, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.9211, "matched_fragments": 486, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.8785, "matched_fragments": 483, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.8522, "matched_fragments": 487, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=DSM 6963", "accession": "GCA_000949655.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6705, "matched_fragments": 434, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 80.604, "matched_fragments": 490, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter shaoyimingii", "strain": "strain=323-1", "accession": "GCA_011578045.1", "taxid": 2715164, "species_taxid": 2715164, "relation_to_type": "type", "validated": true, "ani": 80.5412, "matched_fragments": 430, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.5243, "matched_fragments": 457, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter celticus", "strain": "strain=ANC 4603", "accession": "GCA_001707755.1", "taxid": 1891224, "species_taxid": 1891224, "relation_to_type": "type", "validated": true, "ani": 80.4763, "matched_fragments": 465, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 80.4398, "matched_fragments": 376, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 80.2941, "matched_fragments": 443, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter kanungonis", "strain": "strain=PS-1", "accession": "GCA_009939195.1", "taxid": 2699469, "species_taxid": 2699469, "relation_to_type": "type", "validated": true, "ani": 80.2193, "matched_fragments": 387, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 80.1936, "matched_fragments": 403, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 80.0283, "matched_fragments": 360, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pragensis", "strain": "strain=ANC 4149", "accession": "GCA_001605895.1", "taxid": 1806892, "species_taxid": 1806892, "relation_to_type": "type", "validated": true, "ani": 79.9584, "matched_fragments": 372, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 79.0297, "matched_fragments": 343, 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