{
    "type": "genome",
    "identifier": "GCF_009377345.1",
    "organism": "Deinococcus terrestris",
    "title": "Deinococcus terrestris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009377345.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12885546",
        "wgs_master": "WBSL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2651870",
        "species_taxid": "2651870",
        "organism_name": "Deinococcus terrestris",
        "infraspecific_name": "strain=SDU3-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/28",
        "asm_name": "ASM937734v1",
        "asm_submitter": "Shandong University",
        "gbrs_paired_asm": "GCA_009377345.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/377/345/GCF_009377345.1_ASM937734v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3493247",
        "genome_size_ungapped": "3493247",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009377345.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "3544",
        "protein_coding_gene_count": "3443",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-28",
    "dateModified": "2019-10-28",
    "datePublished": "2019-10-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deinococcus terrestris"
        ],
        "sample_taxid": [
            "2651870"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Jinan, Shandong University campus"
        ],
        "sample_host_location_id": [],
        "data_size": "0.955 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3493247",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "1235609",
        "N50 (bp)": "308062",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.2",
        "Number of CDSs": "3497",
        "Average Protein Length": "298.1",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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            },
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                "status": "below_threshold"
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            {
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            {
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                "species_taxid": 200253,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Deinococcus planocerae",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus phoenicis",
                "strain": "strain=1P10ME",
                "accession": "GCA_000599865.1",
                "taxid": 1476583,
                "species_taxid": 1476583,
                "relation_to_type": "type",
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                "ani": 81.909,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus metallilatus",
                "strain": "strain=DSM 105434",
                "accession": "GCA_014202095.1",
                "taxid": 1211322,
                "species_taxid": 1211322,
                "relation_to_type": "type",
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                "ani": 81.8012,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus aerolatus",
                "strain": "strain=JCM 15442",
                "accession": "GCA_014647055.1",
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                "species_taxid": 522487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1435,
                "matched_fragments": 539,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Deinococcus malanensis",
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                "accession": "GCA_014647655.1",
                "taxid": 1706855,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6111,
                "matched_fragments": 407,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
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                "mean_intra_species_ani": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "terrestris"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}