{ "type": "genome", "identifier": "GCF_009380155.1", "organism": "Pseudomonas piscis", "title": "Pseudomonas piscis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009380155.1", "bioproject": "PRJNA224116", "biosample": "SAMN13064563", "wgs_master": "WHUV00000000.1", "refseq_category": "reference genome", "taxid": "2614538", "species_taxid": "2614538", "organism_name": "Pseudomonas piscis", "infraspecific_name": "strain=MC042", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/28", "asm_name": "ASM938015v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_009380155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/380/155/GCF_009380155.1_ASM938015v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6927622", "genome_size_ungapped": "6927622", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009380155.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "6433", "protein_coding_gene_count": "6318", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-28", "dateModified": "2019-10-28", "datePublished": "2019-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas piscis" ], "sample_taxid": [ "2614538" ], "sample_host_organism": [ "Maccullochella peelii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.914 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6927622", "Number of Sequences": "20", "Longest Sequences (bp)": "2098401", "N50 (bp)": "1496159", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "6359", "Average Protein Length": "321.5", "Coding Ratio (%)": "88.5", "Number of rRNAs": "4", "Number of tRNAs": "66", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas sessilinigenes", "strain": "strain=CMR12a", "accession": "GCA_003850565.1", "taxid": 658629, "species_taxid": 658629, "relation_to_type": "type", "validated": true, "ani": 92.387, "matched_fragments": 1959, 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"organism_name": "Pseudomonas viciae", "strain": "strain=11K1", "accession": "GCA_004786035.1", "taxid": 2505979, "species_taxid": 2505979, "relation_to_type": "type", "validated": true, "ani": 83.3558, "matched_fragments": 1222, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas muyukensis", "strain": "strain=COW39", "accession": "GCA_019139535.1", "taxid": 2842357, "species_taxid": 2842357, "relation_to_type": "type", "validated": true, "ani": 82.9088, "matched_fragments": 1208, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 82.8274, "matched_fragments": 1080, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 82.7722, "matched_fragments": 1143, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=NBRC 103162", "accession": "GCA_000730665.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 82.434, "matched_fragments": 998, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=DSM 15088", "accession": "GCA_000688275.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 82.3689, "matched_fragments": 1016, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_013373915.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 82.0676, "matched_fragments": 1018, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 82.0378, "matched_fragments": 984, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 81.998, "matched_fragments": 1075, "total_fragments": 2301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": 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